All of the software we develop is open-source and available under Gnu public license.
NERDSS: Nonequilibrium Reaction-diffusion self-assembly simulator (2020)
SBOPN: Stoichiometric Balance Optimized for Protein Networks (2018)
FPR : Structure resolved reaction-diffusion simulator using the Free-propagator Reweighting (FPR) algorithm (2018)
IIN Sampling: Monte Carlo sampling of Interface Interaction Networks (IIN) for a defined protein network (2017)
- Example networks and Cytoscape files: David Holland 2017
Check out some movies of biological simulations