Publications

Reviews

Woodson, S. A. (2017). Current Protocols in Nucleic Acid Chemistry. Curr Protoc Nucleic Acid Chem 70, 11.4.1-11.4.19.

Woodson, S. A. (2011). RNA Folding Pathways and the Self-Assembly of Ribosomes. Acc. Chem. Res. 44, 1312-1319.

Woodson, S. A. (2010). Compact intermediates in RNA folding. Annu. Rev. Biophys. 39, 61-77.

Woodson, S. A. (2010). Taming free energy landscapes with RNA chaperones. RNA Biol. 7, 677-686.

RNA folding

Jones, C. P., Panja, S., Woodson, S. A. & Ferré-D’Amaré, A. R. (2019). Monitoring co-transcriptional folding of riboswitches through helicase unwinding. Methods Enzymol 623, 209–227.

Roh, J. et al. (2018). Effects of Preferential Counterion Interactions on the Specificity of RNA Folding. J Phys Chem Lett 9, 5726–5732.

Hua, B., Panja, S., Wang, Y., Woodson, S. & Ha, T. (2018). Mimicking Co-Transcriptional RNA Folding Using a Superhelicase. J Am Chem Soc. doi:10.1021/jacs.8b03784

Hao, Y. et al. (2018). Time‐Resolved Hydroxyl Radical Footprinting of RNA with X‐Rays. Curr Protoc Nucleic Acid Chem 73, e52.

Panja, S., Hua, B., Zegarra, D., Ha, T. & Woodson, S. A. (2017). Metals induce transient folding and activation of the twister ribozyme. Nat Chem Biol 13, 1109–1114.

Ribosome assembly

Rodgers, M. L. & Woodson, S. A. (2019). Transcription increases the cooperativity of ribonucleoprotein assembly. Cell doi: 10.1016/j.cell.2019.11.007

Sharma, I. M. & Woodson, S. A. (2019). RbfA and IF3 couple ribosome biogenesis and translation initiation to increase stress tolerance. Nucl. Acids Res. pii: gkz1065. doi: 10.1093/nar/gkz1065.

Rodgers, M. L., Hao, Y. & Woodson, S. A. (2019). A newborn RNA switches its fate. Nat Chem Biol. 15, 1031–1032.

Razi, A. et al. (2019). Role of Era in assembly and homeostasis of the ribosomal small subunit. Nucleic Acids Res. doi:10.1093/nar/gkz571

Sharma, I. et al. (2018). A metastable rRNA junction essential for bacterial 30S biogenesis. Nucleic Acids Res 46, gky120.

Sharma, I., Korman, A. & Woodson, S. A. (2018). The Hfq chaperone helps the ribosome mature. Embo J 37, e99616.

Abeysirigunawardena, S. C. et al. (2017). Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. Nat. Commun. 8, 1 9.

Small non-coding RNAs in bacteria

Santiago-Frangos, A. et al. Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation. (2019). Proc National Acad Sci 116, 201814428.

Santiago‐Frangos, A. & Woodson, S. A. (2018). Hfq chaperone brings speed dating to bacterial sRNA. Wiley Interdiscip Rev RNA 9, e1475.

Djapgne, L. et al. (2018). The Pseudomonas aeruginosa PrrF1 and PrrF2 Small Regulatory RNAs Promote 2-Alkyl-4-Quinolone Production through Redundant Regulation of the antR mRNA. J Bacteriol 200, e00704-17.

Santiago-Frangos, A., Jeliazkov, J. R., Gray, J. J. & Woodson, S. A. (2017). Acidic C-terminal domains autoregulate the RNA chaperone Hfq. Elife 6, e27049.

Complete List of Publications