Published Methods

Peng Y, Soper T, and Woodson SA. 2011. RNase footprinting of protein binding sites on an mRNA target of small RNAs. MiMB. In press.

Woodson, S.A. and Koculi, E. 2009. Analysis of RNA folding by native polyacrylamide gel electrophoresis. Methods Enzymol. 469: 189-208.

Adilakshmi, T., Soper, S.F. and Woodson, S.A. 2009. Structural analysis of RNA in living cells by in vivo synchrotron X-ray footprinting. Methods Enzymol. 468: 239-258.

Woodson, S.A. 2001. Probing RNA folding pathways by RNA fingerprinting. Curr. Protoc. Nucleic Acid Chem. Chapter 11: Unit 11.4.

Woodson, S.A., Deras, M.L. and Brenowitz, M. 2001. Time-resolved hydroxyl radical footprinting of RNA with X-rays. Curr. Protoc. Nucleic Acid Chem. Chapter 11: Unit 11.6.

Ralston, C.Y., Sclavi, B., Sullivan, M., Deras, M.L., Woodson, S.A., Chance, M.R. and Brenowitz, M. 2000. Time-resolved synchrotron X-ray footprinting and its application to RNA folding. Methods Enzymol. 317: 353-368.