Reviews
Rodgers, M.L. & Woodson, S.A. (2021) A roadmap for rRNA folding and assembly during transcription. Trends Biochem Sci, 10.1016/j.tibs.2021.05.009.
Santiago‐Frangos, A. & Woodson, S.A. (2018) Hfq chaperone brings speed dating to bacterial sRNA. Wiley Interdiscip Rev RNA, 9, e1475.
Woodson, S.A., Panja, S. & Santiago-Frangos, A. (2018) Proteins That Chaperone RNA Regulation. Microbiol Spectr, 6.
Woodson, S.A. (2017) Current Protocols in Nucleic Acid Chemistry. Curr Protoc Nucleic Acid Chem, 70, 11.4.1-11.4.19.
Woodson, S.A. (2015) RNA folding retrospective: lessons from ribozymes big and small. RNA, 21, 502 503.
Woodson, S.A. (2011) RNA folding pathways and the self-assembly of ribosomes. Acc Chem Res, 44, 1312–1319.
Woodson, S.A. (2010) Compact Intermediates in RNA Folding. Biophysics, 39, 61–77.
Woodson, S.A. (2010) Taming free energy landscapes with RNA chaperones. RNA Biol, 7, 677–686.
RNA folding
Korman, A., et. al. (2020) Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space. Proc National Acad Sci, 117, 12080–12086.
Jones, C. P., Panja, S., Woodson, S. A. & Ferré-D’Amaré, A. R. (2019). Monitoring co-transcriptional folding of riboswitches through helicase unwinding. Methods Enzymol 623, 209–227.
Roh, J. et al. (2018). Effects of Preferential Counterion Interactions on the Specificity of RNA Folding. J Phys Chem Lett 9, 5726–5732.
Hua, B., Panja, S., Wang, Y., Woodson, S. & Ha, T. (2018). Mimicking Co-Transcriptional RNA Folding Using a Superhelicase. J Am Chem Soc. doi:10.1021/jacs.8b03784
Hao, Y. et al. (2018). Time‐Resolved Hydroxyl Radical Footprinting of RNA with X‐Rays. Curr Protoc Nucleic Acid Chem 73, e52.
Ribosome assembly
Rodgers, M. L. & Woodson, S. A. (2019). Transcription increases the cooperativity of ribonucleoprotein assembly. Cell doi: 10.1016/j.cell.2019.11.007
Sharma, I. M. & Woodson, S. A. (2019). RbfA and IF3 couple ribosome biogenesis and translation initiation to increase stress tolerance. Nucl. Acids Res. pii: gkz1065. doi: 10.1093/nar/gkz1065.
Razi, A. et al. (2019). Role of Era in assembly and homeostasis of the ribosomal small subunit. Nucleic Acids Res. doi:10.1093/nar/gkz571
Sharma, I. et al. (2018). A metastable rRNA junction essential for bacterial 30S biogenesis. Nucleic Acids Res 46, gky120.
Small non-coding RNAs in bacteria
Malecka, E.M., et al. (2021) Stabilization of Hfq-mediated translational repression by the co-repressor Crc in Pseudomonas aeruginosa. Nucleic Acids Res, 49, gkab510-.
Małecka, E.M. & Woodson, S.A. (2021) Stepwise sRNA targeting of structured bacterial mRNAs leads to abortive annealing. Mol Cell, 10.1016/j.molcel.2021.02.019.
Santiago-Frangos, A. et al. Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation. (2019). Proc National Acad Sci 116, 201814428.
Santiago‐Frangos, A. & Woodson, S. A. (2018). Hfq chaperone brings speed dating to bacterial sRNA. Wiley Interdiscip Rev RNA 9, e1475.
Djapgne, L. et al. (2018). The Pseudomonas aeruginosa PrrF1 and PrrF2 Small Regulatory RNAs Promote 2-Alkyl-4-Quinolone Production through Redundant Regulation of the antR mRNA. J Bacteriol 200, e00704-17.
Triplet Repeat RNAs and LLPS
Li, P., Moulick, R., et al. (2021). RNA toxicity and perturbation of rRNA processing in spinocerebellar ataxia type 2. Movement Disorders. doi:10.1002/mds.28729