2021

• Blatchley MR, Hall F, Ntekoumes D, Cho H, Kailash V, Vazquez-Duhalt R, Gerecht S. Discretizing Three-Dimensional Oxygen Gradients to Modulate and Investigate Cellular Processes. Adv Sci (Weinh). 2021 Jul;8(14):e2100190. doi: 10.1002/advs.202100190. Epub 2021 Jun 21. PMID: 34151527; PMCID: PMC8292886.
• Chan XY, Volkova E, Eoh J, Black R, Fang L, Gorashi R, Song J, Wang J, Elliott MB, Barreto-Ortiz SF, Chen J, Lin BL, Santhanam L, Cheng L, Lee FS, Prchal JT, Gerecht S. HIF2A gain-of-function mutation modulates the stiffness of smooth muscle cells and compromises vascular mechanics. iScience. 2021 Mar 2;24(4):102246. doi: 10.1016/j.isci.2021.102246. PMID: 33796838; PMCID: PMC7995528.
• Gao FJ, Klinedinst D, Fernandez FX, Cheng B, Savonenko A, Devenney B, Li Y, Wu D, Pomper MG, Reeves RH. Forebrain Shh overexpression improves cognitive function and locomotor hyperactivity in an aneuploid mouse model of Down syndrome and its euploid littermates. Acta Neuropathol Commun. 2021 Aug 16;9(1):137. doi: 10.1186/s40478-021-01237-z. PMID: 34399854; PMCID: PMC8365939.
• Godet I, Mamo M, Thurnheer A, Rosen DM, Gilkes DM. Post-Hypoxic Cells Promote Metastatic Recurrence after Chemotherapy Treatment in TNBC. Cancers (Basel). 2021 Nov 2;13(21):5509. doi: 10.3390/cancers13215509. PMID: 34771673; PMCID: PMC8583122.
• Harris MA, Kuang H, Schneiderman Z, Shiao ML, Crane AT, Chrostek MR, Tăbăran AF, Pengo T, Liaw K, Xu B, Lin L, Chen CC, O’Sullivan MG, Kannan RM, Low WC, Kokkoli E. ssDNA nanotubes for selective targeting of glioblastoma and delivery of doxorubicin for enhanced survival. Sci Adv. 2021 Dec 3;7(49):eabl5872. doi: 10.1126/sciadv.abl5872. Epub 2021 Dec 1. PMID: 34851666; PMCID: PMC8635432.
• Hu Y, Zhu Y, Sutherland ND, Wilson DR, Pang M, Liu E, Staub JR, Berlinicke CA, Zack DJ, Green JJ, Reddy SK, Mao HQ. Size-Controlled and Shelf-Stable DNA Particles for Production of Lentiviral Vectors. Nano Lett. 2021 Jul 14;21(13):5697-5705. doi: 10.1021/acs.nanolett.1c01421. Epub 2021 Jul 6. PMID: 34228937; PMCID: PMC8283758.
• Rocha HL, Godet I, Kurtoglu F, Metzcar J, Konstantinopoulos K, Bhoyar S, Gilkes DM, Macklin P. A persistent invasive phenotype in post-hypoxic tumor cells is revealed by fate mapping and computational modeling. iScience. 2021 Aug 4;24(9):102935. doi: 10.1016/j.isci.2021.102935. PMID: 34568781; PMCID: PMC8449249.
• Salerno D, Sofou S. Growth Inhibition of Triple-Negative Breast Cancer: The Role of Spatiotemporal Delivery of Neoadjuvant Doxorubicin and Cisplatin. Pharmaceuticals (Basel). 2021 Oct 12;14(10):1035. doi: 10.3390/ph14101035. PMID: 34681259; PMCID: PMC8540483.
• Shabana AM, Xu B, Schneiderman Z, Ma J, Chen CC, Kokkoli E. Targeted Liposomes Encapsulating miR-603 Complexes Enhance Radiation Sensitivity of Patient-Derived Glioblastoma Stem-Like Cells. Pharmaceutics. 2021 Jul 21;13(8):1115. doi: 10.3390/pharmaceutics13081115. PMID: 34452076; PMCID: PMC8399469.
• Wang Q, Wang T, Zhang R, Yang S, McFarland KS, Chung CY, Jia H, Wang LX, Cipollo JF, Betenbaugh MJ. The interplay of protein engineering and glycoengineering to fine-tune antibody glycosylation and its impact on effector functions. Biotechnol Bioeng. 2022 Jan;119(1):102-117. doi: 10.1002/bit.27953. Epub 2021 Oct 20. PMID: 34647616.
• Zhang Y, He Y, Sakowski EG, Preheim SP. Influence of Simplified Microbial Community Biofilms on Bacterial Retention in Porous Media under Conditions of Stormwater Biofiltration. Microbiol Spectr. 2021 Oct 31;9(2):e0110521. doi: 10.1128/Spectrum.01105-21. Epub 2021 Oct 27. PMID: 34704792; PMCID: PMC8549730.
• Zhang Y, Wayner CC, Wu S, Liu X, Ball WP, Preheim SP. Effect of Strain-Specific Biofilm Properties on the Retention of Colloids in Saturated Porous Media under Conditions of Stormwater Biofiltration. Environ Sci Technol. 2021 Feb 16;55(4):2585-2596. doi: 10.1021/acs.est.0c06177. Epub 2021 Feb 1. PMID: 33523627.

Rindone AN, Liu X, Farhat S, Perdomo-Pantoja A, Witham TF, Coutu DL, Wan M, Grayson WL. Quantitative 3D imaging of the cranial microvascular environment at single-cell resolution Nat Commun. 2021 Oct 28;12(1):6219. doi: 10.1038/s41467-021-26455-w. PMID: 34711819

2020

• Wooten M, Ranjan R, and Chen X. 2020. Asymmetric Histone Inheritance in Asymmetrically Dividing Stem Cells.Trends Genet. 2020 Jan;36(1):30-43. doi: 10.1016/j.tig.2019.10.004. Epub 2019 Nov 18. Review.
• Wooten M, Snedeker J, Nizami ZF, Yang X, Ranjan R, Urban E, Kim JM, Gall J, Xiao J, and Chen X. 2020. Asymmetric histone inheritance via strand-specific incorporation and biased replication fork movement. Nat Struct Mol Biol. 2019 Aug;26(8):732-743. doi: 10.1038/s41594-019-0269-z. Epub 2019 Jul 29.
• Ranjan R, Snedeker J, and Chen X. 2020. Asymmetric Centromeres Differentially Coordinate with Mitotic Machinery to Ensure Biased Sister Chromatid Segregation in Germline Stem Cells. Cell Stem Cell. 2019 Nov 7;25(5):666-681.e5. doi: 10.1016/j.stem.2019.08.014. Epub 2019 Sep 26.
• Sharma IM, Woodson SA. 2020. RbfA and IF3 couple ribosome biogenesis and translation initiation to increase stress tolerance.Nucleic Acids Res. 2020 Jan 10;48(1):359-372. doi: 10.1093/nar/gkz1065.
• Lee T, Panda SS, Tovar JD, and Katz HE. 2020. Unusually Conductive Organic-Inorganic Hybrid Nanostructures Derived from Bio-Inspired Mineralization of Peptide/Pi-Electron Assemblies.ACS Nano. 2020 Feb 4. doi: 10.1021/acsnano.9b07911. [Epub ahead of print]
• Niaki AG, Sarkar J, Cai X, Rhine K, Vidaurre V, Guy B, Hurst M, Lee JC, Koh HR, Guo L, Fare CM, Shorter J, and Myong S. 2020. Loss of Dynamic RNA Interaction and Aberrant Phase Separation Induced by Two Distinct Types of ALS/FTD-Linked FUS Mutations. Mol Cell. 2020 Jan 2;77(1):82-94.e4. doi: 10.1016/j.molcel.2019.09.022. Epub 2019 Oct 17.
• Duan X, Li Y, Yi K, Guo F, Wang H, Wu PH, Yang J, Mair DB, Morales EA, Kalab P, Wirtz D, Sun SX, and Li R. 2020. Dynamic organelle distribution initiates actin-based spindle migration in mouse oocytes. Nat Commun. 2020 Jan 14;11(1):277. doi: 10.1038/s41467-019-14068-3.
• Anderson CF, Grimmett ME, Domalewski CJ, and Cui H. 2020. Inhalable nanotherapeutics to improve treatment efficacy for common lung diseases.
Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2020 Jan;12(1):e1586. doi: 10.1002/wnan.1586. Epub 2019 Oct 10.
• Schiapparelli P, Zhang P, Lara-Velazquez M, Guerrero-Cazares H, Lin R, Su H, Chakroun RW, Tusa M, Quiñones-Hinojosa A, and Cui H. 2020. Self-assembling and self-formulating prodrug hydrogelator extends survival in a glioblastoma resection and recurrence model.J Control Release. 2020 Jan 3;319:311-321. doi: 10.1016/j.jconrel.2020.01.003. [Epub ahead of print]
• Chakroun RW, Sneider A, Anderson CF, Wang F, Wu PH, Wirtz D, and Cui H. 2020. Supramolecular Design of Unsymmetric Reverse Bolaamphiphiles for Cell-Sensitive Hydrogel Degradation and Drug Release. Angew Chem Int Ed Engl. 2020 Jan 13. doi: 10.1002/anie.201913087. [Epub ahead of print]
• Panja S, Małecka EM, Santiago-Frangos A, and Woodson SA. 2020. Quantitative Analysis of RNA Chaperone Activity by Native Gel Electrophoresis and Fluorescence Spectroscopy.Methods Mol Biol. 2020;2106:19-39. doi: 10.1007/978-1-0716-0231-7_2.

2019

• Levendosky RF, and Bowman GD.2019. Asymmetry between the two acidic patches dictates the direction of nucleosome sliding by the ISWI chromatin remodeler. Elife. 2019 May 16;8. pii: e45472. doi: 10.7554/eLife.45472.
• Mistriotis P, Wisniewski EO, Bera K, Keys J, Li Y, Tuntithavornwat S, Law RA, Perez-Gonzalez NA, Erdogmus E, Zhang Y, Zhao R, Sun SX, Kalab P, Lammerding J, and Konstantopoulos K. 2019. Confinement hinders motility by inducing RhoA-mediated nuclear influx, volume expansion, and blebbing. J Cell Biol. 2019 Dec 2;218(12):4093-4111. doi: 10.1083/jcb.201902057. Epub 2019 Nov 5.
• Lewis DM, Pruitt H, Jain N, Ciccaglione M, McCaffery JM, Xia Z, Weber K, Eisinger-Mathason TSK, and Gerecht S. 2019. A Feedback Loop between Hypoxia and Matrix Stress Relaxation Increases Oxygen-Axis Migration and Metastasis in Sarcoma.Cancer Res. 2019 Apr 15;79(8):1981-1995. doi: 10.1158/0008-5472.CAN-18-1984. Epub 2019 Feb 18.
• Xie P, Yao Y, Huang Z, Liu Z, Zhang J, Li T, Wang G, Shahbazian-Yassar R, Hu L, and Wang C. 2019. Highly efficient decomposition of ammonia using high-entropy alloy catalysts.
Nat Commun. 2019 Sep 5;10(1):4011. doi: 10.1038/s41467-019-11848-9.
• Anderson CF, Chakroun RW, Su H, Mitrut RE, and Cui H. 2019. Interface-Enrichment-Induced Instability and Drug-Loading-Enhanced Stability in Inhalable Delivery of Supramolecular Filaments. ACS Nano. 2019 Nov 26;13(11):12957-12968. doi: 10.1021/acsnano.9b05556. Epub 2019 Oct 25.
• Blatchley MR, Hall F, Wang S, Pruitt HC, and Gerecht S. 2019. Hypoxia and matrix viscoelasticity sequentially regulate endothelial progenitor cluster-based vasculogenesis. Sci Adv. 2019 Mar 20;5(3):eaau7518. doi: 10.1126/sciadv.aau7518. eCollection 2019 Mar.
• Yang K, and Greenberg MM. 2019. DNA-Protein Cross-Link Formation in Nucleosome Core Particles Treated with Methyl Methanesulfonate.Chem Res Toxicol. 2019 Oct 21;32(10):2144-2151. doi: 10.1021/acs.chemrestox.9b00314. Epub 2019 Sep 18.
• Calzada E, Avery E, Sam PN, Modak A, Wang C, McCaffery JM, Han X, Alder NN, and Claypool SM. 2019. Phosphatidylethanolamine made in the inner mitochondrial membrane is essential for yeast cytochrome bc1 complex function. Nat Commun. 2019 Mar 29;10(1):1432. doi: 10.1038/s41467-019-09425-1.
• Shin D, Huang T, Neibloom D, Bevan MA, and Frechette J. 2019. Multifunctional Liquid Marble Compound Lenses. ACS Appl Mater Interfaces. 2019 Sep 18;11(37):34478-34486. doi: 10.1021/acsami.9b12738. Epub 2019 Sep 10.
• Rodgers ML, AND Woodson SA. 2019. Transcription Increases the Cooperativity of Ribonucleoprotein Assembly. Cell. 2019 Nov 27;179(6):1370-1381.e12. doi: 10.1016/j.cell.2019.11.007. Epub 2019 Nov 21.
• Hu J, Su Q, Schlessman JL, and Rokita SE. 2019. Redox control of iodotyrosine deiodinase.Protein Sci. 2019 Jan;28(1):68-78. doi: 10.1002/pro.3479. Epub 2018 Oct 17.
• Grzesik P, Pryce EN, Bhalala A, Vij M, Ahmed R, Etienne L, Perez P, McCaffery JM, and Desai APJ. 2019. Functional Domains of the Herpes Simplex Virus Type 1 Tegument Protein pUL37: The Amino Terminus is Dispensable for Virus Replication in Tissue Culture.Viruses. 2019 Sep 14;11(9). pii: E853. doi: 10.3390/v11090853.
• Camacho E, Vij R, Chrissian C, Prados-Rosales R, Gil D, O’Meally RN, Cordero RJB, Cole RN, McCaffery JM, Stark RE, and Casadevall A. 2019.The structural unit of melanin in the cell wall of the fungal pathogen Cryptococcus neoformans. J Biol Chem. 2019 Jul 5;294(27):10471-10489. doi: 10.1074/jbc.RA119.008684. Epub 2019 May 22.
• Godet I, Shin YJ, Ju JA, Ye IC, Wang G, and Gilkes DM. 2019. Fate-mapping post-hypoxic tumor cells reveals a ROS-resistant phenotype that promotes metastasis.
Nat Commun. 2019 Oct 24;10(1):4862. doi: 10.1038/s41467-019-12412-1.
• Border SE, Pavlović RZ, Zhiquan L, Gunther MJ, Wang H, Cui H, and Badjić JD. 2019. Light-Triggered Transformation of Molecular Baskets into Organic Nanoparticles. Chemistry. 2019 Jan 2;25(1):273-279. doi: 10.1002/chem.201803693. Epub 2018 Oct 12.
• Chakroun RW, Wang F, Lin R, Wang Y, Su H, Pompa D, and Cui H. 2019. Fine-Tuning the Linear Release Rate of Paclitaxel-Bearing Supramolecular Filament Hydrogels through Molecular Engineering.ACS Nano. 2019 Jul 23;13(7):7780-7790. doi: 10.1021/acsnano.9b01689. Epub 2019 May 22.
• Wang W, Wang H, Zhiquan L, Xie H, Cui H, and Badjić JD. 2019. On the encapsulation and assembly of anticancer drugs in a cooperative fashion.
Chem Sci. 2019 May 8;10(22):5678-5685. doi: 10.1039/c9sc01380f. eCollection 2019 Jun 14.
• Su H, Wang F, Wang Y, Cheetham AG, Cui H. 2019. Macrocyclization of a Class of Camptothecin Analogues into Tubular Supramolecular Polymers. J Am Chem Soc. 2019 Oct 30;141(43):17107-17111. doi: 10.1021/jacs.9b09848. Epub 2019 Oct 18.
• Pruitt HC, Lewis D, Ciccaglione M, Connor S, Smith Q, Hickey JW, Schneck JP, and Gerecht S. 2019. Collagen fiber structure guides 3D motility of cytotoxic T lymphocytes.Matrix Biol. 2019 Feb 16. pii: S0945-053X(18)30458-X. doi: 10.1016/j.matbio.2019.02.003. [Epub ahead of print]
• Camara N, Whitworth C, Dove A, and Van Doren M. 2019. Doublesex controls specification and maintenance of the gonad stem cell niches in Drosophila.Development. 2019 Jun 10;146(11). pii: dev170001. doi: 10.1242/dev.170001.
• Su H, Zhang W, Wang H, Wang F, and Cui H. 2019. Paclitaxel-Promoted Supramolecular Polymerization of Peptide Conjugates. J Am Chem Soc. 2019 Jul 31;141(30):11997-12004. doi: 10.1021/jacs.9b04730. Epub 2019 Jun 28.
• Primus S, Pozmanter C, Baxter K, and Van Doren M. 2019. Tudor-domain containing protein 5-like promotes male sexual identity in the Drosophila germline and is repressed in females by Sex lethal.PLoS Genet. 2019 Jul 22;15(7):e1007617. doi: 10.1371/journal.pgen.1007617. eCollection 2019 Jul.
• Byrne SR, Yang K, and Rokita SE. 2019. Effect of Nucleosome Assembly on Alkylation by a Dynamic Electrophile. Chem Res Toxicol. 2019 May 20;32(5):917-925. doi: 10.1021/acs.chemrestox.9b00057. Epub 2019 Mar 27.
• Chokshi V, Druciak B, Worley PF, and Lee HK. 2019. Homer1a Is Required for Establishment of Contralateral Bias and Maintenance of Ocular Dominance in Mouse Visual Cortex.J Neurosci. 2019 May 15;39(20):3897-3905. doi: 10.1523/JNEUROSCI.3188-18.2019. Epub 2019 Mar 13.
• Fernandes D, Santos SD, Coutinho E, Whitt JL, Beltrão N, Rondão T, Leite MI, Buckley C, Lee HK, and Carvalho AL. 2019. Disrupted AMPA Receptor Function upon Genetic- or Antibody-Mediated Loss of Autism-Associated CASPR2.Cereb Cortex. 2019 Dec 17;29(12):4919-4931. doi: 10.1093/cercor/bhz032.
• Rodriguez G, Mesik L, Gao M, Parkins S, Saha R, and Lee HK. 2019. Disruption of NMDAR Function Prevents Normal Experience-Dependent Homeostatic Synaptic Plasticity in Mouse Primary Visual Cortex.J Neurosci. 2019 Sep 25;39(39):7664-7673. doi: 10.1523/JNEUROSCI.2117-18.2019. Epub 2019 Aug 14.
• Chokshi V, Gao M, Grier BD, Owens A, Wang H, Worley PF, and Lee HK. 2019. Neuron. 2019. Input-Specific Metaplasticity in the Visual Cortex Requires Homer1a-Mediated mGluR5 Signaling.Nov 20;104(4):736-748.e6. doi: 10.1016/j.neuron.2019.08.017. Epub 2019 Sep 25.
• Viets K, Sauria MEG, Chernoff C, Rodriguez Viales R, Echterling M, Anderson C, Tran S, Dove A, Goyal R, Voortman L, Gordus A, Furlong EEM, Taylor J, and Johnston RJ Jr. 2019. Characterization of Button Loci that Promote Homologous Chromosome Pairing and Cell-Type-Specific Interchromosomal Gene Regulation.Dev Cell. 2019 Nov 4;51(3):341-356.e7. doi: 10.1016/j.devcel.2019.09.007. Epub 2019 Oct 10.
• Chum AP, Shoemaker SR, Fleming PJ, AND Fleming KG. 2019. Plasticity and transient binding are key ingredients of the periplasmic chaperone network.Protein Sci. 2019 Jul;28(7):1340-1349. doi: 10.1002/pro.3641. Epub 2019 May 23.
• Ceasrine AM, Ruiz-Otero N, Lin EE, Lumelsky DN, Boehm ED, and Kuruvilla R. 2019. Tamoxifen Improves Glucose Tolerance in a Delivery-, Sex-, and Strain-Dependent Manner in Mice. Endocrinology. 2019 Apr 1;160(4):782-790. doi: 10.1210/en.2018-00985.
• Crerar H, Scott-Solomon E, Bodkin-Clarke C, Andreassi C, Hazbon M, Logie E, Cano-Jaimez M, Gaspari M, Kuruvilla R, and Riccio A. 2020. Regulation of NGF Signaling by an Axonal Untranslated mRNA. Neuron. 2019 May 8;102(3):553-563.
• Ren R, Ghassabi Kondalaji S, and Bowman GD. 2019.The Chd1 chromatin remodeler forms long-lived complexes with nucleosomes in the presence of ADP·BeF3 – and transition state analogs.J Biol Chem. 2019 Nov 29;294(48):18181-18191.
• Sabantsev A, Levendosky RF, Zhuang X, Bowman GD, and Deindl S. 2019. Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling. Nat Commun. 2019 Apr 12;10(1):1720. doi: 10.1038/s41467-019-09657-1.

2018

• Xu W, Kwok KS, and Gracias DH. 2018. Ultrathin Shape Change Smart Materials. Acc Chem Res. 2018 Feb 20;51(2):436-444.
• Qiu B, Lin Y, Arinze ES, Chiu A, Li L, and Thon SM. 2018. Photonic band engineering in absorbing media for spectrally selective optoelectronic films.Opt Express. 2018 Oct 15;26(21):26933-26945. doi: 10.1364/OE.26.026933.
• Xu W, Paidi SK, Qin Z, Huang Q, Yu CH, Pagaduan JV, Buehler MJ, Barman I, and Gracias DH. 2018. Self-Folding Hybrid Graphene Skin for 3D Biosensing. Nano Lett. 2018 Nov 19. doi: 10.1021/acs.nanolett.8b03461. [Epub ahead of print]
• Yang K, Park D, Tretyakova NY, and Greenberg MM. 2018. Histone tails decrease N7-methyl-2′-deoxyguanosine depurination and yield DNA-protein cross-links in nucleosome core particles and cells.Proc Natl Acad Sci U S A. 2018 Nov 14. pii: 201813338. doi: 10.1073/pnas.1813338115. [Epub ahead of print]
• Li Y, Lock LL, Wang Y, Ou SH, Stern D, Schˆn A, Freire E, Xu X, Ghose S, Li ZJ, AND Cui H. 2018. Bioinspired supramolecular engineering of self-assembling immunofibers for high affinity binding of immunoglobulin G. Biomaterials. 2018 Sep;178:448-457.
• Cui H, and 2018. Light-Triggered Transformation of Molecular Baskets into Organic Nanoparticles.
• RodrÌguez G, Chakraborty D, Schrode KM, Saha R, Uribe I, Lauer AM, and Lee HK. 2018. Cross-Modal Reinstatement of Thalamocortical Plasticity Accelerates Ocular Dominance Plasticity in Adult Mice. Cell Rep. 2018 Sep 25;24(13):3433-3440.e4.
Chemistry. 2018 Aug 21. doi: 10.1002/chem.201803693. [Epub ahead of print]
• O’Keefe CM, Pisanic TR 2nd, Zec H, Overman MJ, Herman JG, and Wang TH. 2018. Facile profiling of molecular heterogeneity by microfluidic digital melt. Sci Adv. 2018 Sep 28;4(9):eaat6459.
• Zhang Y, Chen L, Hsieh K, and Wang TH. 2018. Ratiometric Fluorescence Coding for Multiplex Nucleic Acid Amplification Testing. Anal Chem. 2018 Oct 16;90(20):12180-12186. doi: 10.1021/acs.analchem.8b03266. Epub 2018 Oct 5.
• Laverty DJ, Mortimer IP, Greenberg MM. 2018. J Am Chem Soc. 2018 Jul 25;140(29):9034-9037. doi: 10.1021/jacs.8b04158. Epub 2018 Jul 12.
• Wang R, Yang K, Banerjee S, Greenberg MM. 2018. Rotational Effects within Nucleosome Core Particles on Abasic Site Reactivity. Biochemistry. 2018 Jul 3;57(26):3945-3952. doi: 10.1021/acs.biochem.8b00493. Epub 2018 Jun 12.
• Cools J, Jin Q, Yoon E, Alba Burbano D, Luo Z, Cuypers D, Callewaert G, Braeken D, and Gracias DH. 2018. A Micropatterned Multielectrode Shell for 3D Spatiotemporal Recording from Live Cells. Adv Sci (Weinh). 2018 Jan 4;5(4):1700731.
• Xu W, Kwok KS, and Gracias DH. 2018. Ultrathin Shape Change Smart Materials.Acc Chem Res. 20;51(2):436-444. doi: 10.1021/acs.accounts.7b00468. Epub 2018 Jan 23.
• Feng L, Shi Z, Xie J, Ma B, and Chen X. 2018. Enhancer of polycomb maintains germline activity and genome integrity in Drosophila testis. Cell Death & Differentiation (2018) 25:1486–1502 .
• Manto MJ, Xie P, Keller MA, Liano WE, Pu T, and Wang C. 2018. Recovery of ammonium from aqueous solutions using ZSM-5. Chemosphere. 2018 May;198:501-509. doi: 10.1016/j.chemosphere.2018.01.126. Epub 2018 Feb 3.
• Winger J, Nodelman IM, Levendosky RF, and Bowman GD. 2018. A twist defect mechanism for ATP-dependent translocation of nucleosomal DNA. Elife. 2018 May 29;7. pii: e34100.
• Tokuda JM, Ren R, Levendosky RF, Tay RJ, Yan M, Pollack L, and Bowman GD. The ATPase motor of the Chd1 chromatin remodeler stimulates DNA unwrapping from the nucleosome. 2018. Nucleic Acids Res. 2018 Jun 1;46(10):4978-4990.
• Wei Z, and Gerecht S.2018. A self-healing hydrogel as an injectable instructive carrier for cellular morphogenesis. Biomaterials. 185:86-96.
• Ceasrine AM, Lin EE, Lumelsky DN, Iyer R, and Kuruvilla R. 2018. Adrb2 controls glucose homeostasis by developmental regulation of pancreatic islet vasculature. Elife. 2018 Oct 10;7. pii: e39689.
• Smith Q, Macklin B, Chan XY, Jones H, Trempel M, Yoder MC, and Gerecht S. 2018. Differential HDAC6 Activity Modulates Ciliogenesis and Subsequent Mechanosensing of Endothelial Cells Derived from Pluripotent Stem Cells. Cell Rep. 24(4):895-908.e6. doi: 10.1016/j.celrep.2018.06.083.
• Smith Q, Rochman N, Carmo AM, Vig D, Chan XY, Sun S, and Gerecht S. 2018. Cytoskeletal tension regulates mesodermal spatial organization and subsequent vascular fate.Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):8167-8172.
• Cho H, Blatchley MR, Duh EJ, and Gerecht S. 2018. Acellular and cellular approaches to improve diabetic wound healing. Adv Drug Deliv Rev. 2018 Aug 1. pii: S0169-409X(18)30193-5.
• Fernandez DC, Fogerson PM, Lazzerini Ospri L, Thomsen MB, Layne RM, Severin D, Zhan J, Singer JH, Kirkwood A, Zhao H, Berson DM, and Hattar S. 2018. Light Affects Mood and Learning through Distinct Retina-Brain Pathways. Cell. 2018 Sep 20;175(1):71-84.e18.
• Eldred KC, Hadyniak SE, Hussey KA, Brenerman B, Zhang PW, Chamling X, Sluch VM, Welsbie DS, Hattar S, Taylor J, Wahlin K, Zack DJ, and Johnston RJ Jr. 2018. Thyroid hormone signaling specifies cone subtypes in human retinal organoids. Science. 2018 Oct 12;362(6411). pii: eaau6348.
• Harris G, Eschment M, Orozco SP, McCaffery JM, Maclennan R, Severin D, Leist M, Kleensang A, Pamies D, Maertens A, Hogberg HT, Freeman D, Kirkwood A, Hartung T, and Smirnova L. 2018. Toxicity, recovery, and resilience in a 3D dopaminergic neuronal in vitro model exposed to rotenone. Arch Toxicol. 2018 Aug;92(8):2587-2606.
• Phatarphekar A, Su Q, Eun SH, Chen X, Rokita SE. 2018. The Importance of a halotyrosine dehalogenase for Drosophila fertility. J. Biol. Chem 293(26): 10314-10321.
• Santiago-Frangos A, Woodson SA. 2018. Hfq chaperone brings speed dating to bacterial sRNA. Wiley Interdiscip Rev RNA. 2018 Apr 6:e1475. doi: 10.1002/wrna.1475. [Epub ahead of print] Review.ğ
• Chowdhury F, Doganay S., Leslie BJ, Singh R, Amar K, Talluri B, Park S, Wang N, Ha T. 2018. Cdc42-dependent modulation of rigidity sensing and cell spreading in tumor repopulating cells. Biochem Biophys Res Commun. 2018 Apr 16. pii: S0006-291X(18)30854-4. doi: 10.1016/j.bbrc.2018.04.085. [Epub ahead of print] PMID: 29673588
• Singh D, Wang Y, Mallon J, Yang O, Fei J, Poddar A, Ceylan D, Bailey S, Ha T.
Mechanisms of improved specificity of engineered Cas9s revealed by single-molecule FRET analysis. 2018 Nat Struct Mol Biol. 2018 Apr;25(4):347-354. doi: 10.1038/s41594-018-0051-7. Epub 2018 Apr 5. PMID: 29622787
• Hua B, Wang Y, Park S, Han KY, Singh D, Kim JH, Cheng W, Ha T. 2018. The Single-Molecule Centroid Localization Algorithm Improves the Accuracy of Fluorescence Binding Assays. Biochemistry. 2018 Mar 13;57(10):1572-1576. doi: 10.1021/acs.biochem.7b01293. Epub 2018 Feb 28. PMID: 29457977
• Lam G, Beemon K. 2018. ALV Integration-Associated Hypomethylation at the TERT Promoter Locus. Viruses. 2018 Feb 10;10(2). pii: E74. doi: 10.3390/v10020074. PMID: 29439385
• Fei J, Jadaliha M, Harmon TS, Li ITS, Hua B, Hao Q, Holehouse AS, Reyer M, Sun Q, Freier SM, Pappu RV, Prasanth KV, Ha T. 2018. Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution. J Cell Sci. 2017 Dec 15;130(24):4180-4192. doi: 10.1242/jcs.206854. Epub 2017 Nov 13. PMID: 2913358 G, Beemon K. 2018. ALV Integration-Associated Hypomethylation at the TERT Promoter Locus. Viruses. 2018 Feb 10;10(2). pii: E74. doi:
• Koh MT, Shao Y, Rosenzweig-Lipson S, Gallagher M. 2018. Treatment with levetiracetam improves cognition in a ketamine rat model of schizophrenia. Schizophr Res. 2018 Mar;193:119-125. doi: 10.1016/j.schres.2017.06.027. Epub 2017 Jun 17. PMID: 28634087
• Gilbert-Honick J, Iyer SR, Somers SM, Lovering RM, Wagner K, Mao HQ, and Grayson WL. 2018. Engineering functional and histological regeneration of vascularized skeletal muscle. Biomaterials. 2018 May;164:70-79.
• Manto MJ, Xie P, Keller MA, Liano WE, Pu T, and Wang C. 2018. Recovery of ammonium from aqueous solutions using ZSM-5. Chemosphere. 2018 May;198:501-509.
• Feng L, Shi Z, Xie J, Ma B, and Chen X. 2018. Enhancer of polycomb maintains germline activity and genome integrity in Drosophila testis. Cell Death Differ. 2018 Jan 23. doi: 10.1038/s41418-017-0056-5.

2017

• Cangialosi A, Yoon C, Liu J, Huang Q, Guo J, Nguyen TD, Gracias DH, Schulman R. 2017. DNA sequence-directed shape change of photopatterned hydrogels via high-degree swelling. Science.15;357(6356):1126-1130.
• Li J, White JT, Saavedra H, Wrabl JO, Motlagh HN, Liu K, Sowers J, Schroer TA, Thompson EB, and Hilser VJ. 2017. Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor. Elife. 2017 Oct 12;6. pii: e30688.
• Anderson C, Reiss I, Zhou C, Cho A, Siddiqi H, Mormann B, Avelis CM, Deford P, Bergland A, Roberts E, Taylor J, Vasiliauskas D, and Johnston RJ. 2018. Natural variation in stochastic photoreceptor specification and color preference in Drosophila. Elife. 2017 Dec 18;6. pii: e29593.
• Yamashita N, Joshi R, Zhang S, Zhang ZY, and Kuruvilla R. 2017. Phospho-Regulation of Soma-to-Axon Transcytosis of Neurotrophin Receptors. Dev Cell. 2017 Sep 25;42(6):626-639.
• Abeysirigunawardena SC, Kim H, Lai J, Ragunathan K, Rappé MC, Luthey-Schulten Z, Ha T, Woodson SA. 2017. Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes. Nat Commun. 2017 Sep 8;8(1):492. doi: 10.1038/s41467-017-00536-1.
• Santiago-Frangos A, Jeliazkov JR, Gray JJ, Woodson SA. 2017. Acidic C-terminal domains autoregulate the RNA chaperone Hfq. Elife. 2017 Aug 9;6. pii: e27049. doi: 10.7554/eLife.27049. PMID: 28826489
• Panja S, Hua B, Zegarra D, Ha T, Woodson SA. 2017. Metals induce transient folding and activation of the twister ribozyme. Nat Chem Biol. 2017 Oct;13(10):1109-1114. doi: 10.1038/nchembio.2459. Epub 2017 Aug 21. PMID: 28825710
• Qiu Y, Levendosky RF, Chakravarthy S, Patel A, Bowman GD, Myong S. 2017. The Chd1 Chromatin Remodeler Shifts Nucleosomal DNA Bidirectionally as a Monomer. Mol Cell. 2017 Oct 5;68(1):76-88.e6. doi: 10.1016/j.molcel.2017.08.018. Epub 2017 Sep 21. PMID: 28943314
• Anderson JL, Mulligan TS, Shen MC, Wang H, Scahill CM, Tan FJ, Du SJ, Busch-Nentwich EM, Farber SA. 2017. mRNA processing in mutant zebrafish lines generated by chemical and CRISPR-mediated mutagenesis produces unexpected transcripts that escape nonsense-mediated decay. PLoS Genet. 2017 Nov 21;13(11):e1007105. doi: 10.1371/journal.pgen.1007105. eCollection 2017 Nov.
• Koh MT, Shao Y, Rosenzweig-Lipson S, Gallagher M. 2018. Treatment with levetiracetam improves cognition in a ketamine rat model of schizophrenia. Schizophr Res. 2018 Mar;193:119-125. doi: 10.1016/j.schres.2017.06.027. Epub 2017 Jun 17. PMID: 28634087
• Haberman RP, Branch A, Gallagher M. 2017. Targeting Neural Hyperactivity as a Treatment to Stem Progression of Late-Onset Alzheimer’s Disease. Neurotherapeutics. 2017 Jul;14(3):662-676. doi: 10.1007/s13311-017-0541
Anderson C, Reiss I, Zhou C, Cho A, Siddiqi H, Mormann B, Avelis CM, Deford P, Bergland A, Roberts E, Taylor J, Vasiliauskas D, and Johnston RJ. 2017. Natural variation in stochastic photoreceptor specification and color preference in Drosophila. Elife. 2017 Dec 18;6.
• Duy PQ, and Hattar S. 2017. Chronic Circadian Misalignment without Circadian Arrhythmicity or Sleep Deprivation Does Not Impair Adult Hippocampal Neurogenesis.J Biol Rhythms. 2017 Dec;32(6):621-626.
• Talaga AK, Dong FN, Reisert J, and Zhao H. 2017. Cilia- and Flagella-Associated Protein 69 Regulates Olfactory Transduction Kinetics in Mice. J Neurosci. 2017 Jun 7;37(23):5699-5710.
• Xiao H, Wang F, Wisniewski J, Shaytan AK, Ghirlando R, FitzGerald PC, Huang Y, Wei D, Li S, Landsman D, Panchenko AR, and Wu C. 2017. Molecular basis of CENP-C association with the CENP-A nucleosome at yeast centromeres. Genes Dev. 2017 Oct 1;31(19):1958-1972.
• Jin M, Fuller GG, Han T, Yao Y, Alessi AF, Freeberg MA, Roach NP, Moresco JJ, Karnovsky A, Baba M, Yates JR 3rd, Gitler AD, Inoki K, Klionsky DJ,and Kim JK. 2017. Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress.Cell Rep. 2017 Jul 25;20(4):895-908.
• Keenan WT, Fernandez DC, Shumway LJ, Zhao H, and Hattar S. 2017. Eye-Drops for Activation of DREADDs. Front Neural Circuits. 2017 Nov 23;11:93.
• Singh SP, Kang S, Kang JW, So PTC, Dasari RR, Yaqoob Z, and Barman I. 2017. Label-free characterization of ultra violet-radiation-induced changes in skin fibroblasts with Raman spectroscopy and quantitative phase microscopy. Sci Rep. 2017 Sep 7;7(1):10829.
• Michael J. Manto, Pengfei Xie, and Chao Wang. 2017. Catalytic Dephosphorylation Using Ceria Nanocrystals. ACS Catal. 2017, 7, 1931−1938.
• Jorgenson TD, Mohammed AM, Agrawal DK, and Schulman R. 2017. Self-Assembly of Hierarchical DNA Nanotube Architectures with Well-Defined Geometries. ACS Nano. 2017 Feb 28;11(2):1927-1936.
• Gigante CM, Dibattista M, Dong FN, Zheng X, Yue S, Young SG, Reisert J, Zheng Y, and Zhao H. 2017. Lamin B1 is required for mature neuron-specific gene expression during olfactory sensory neuron differentiation.Nat Commun. 2017 Apr 20;8:15098.
• Yan J, Anderson C, Viets K, Tran S, Goldberg G, Small S, and Johnston RJ Jr. 2017. Regulatory logic driving stable levels of defective proventriculus expression during terminal photoreceptor specification in flies. Development. 2017 Mar 1;144(5):844-855.
• Li J, White JT, Saavedra H, Wrabl JO, Motlagh HN, Liu K, Sowers J, Schroer TA, Thompson EB, and Hilser VJ. 2017. Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor. Elife. 2017 Oct 12;6. pii: e30688. doi: 10.7554/eLife.30688.
• Apel AR, Hoban K, Chuartzman S, Tonikian R, Sidhu S, Schuldiner M, Wendland B, and Prosser D. 2017. Syp1 regulates the clathrin-mediated and clathrin-independent endocytosis of multiple cargo proteins through a novel sorting motif. Mol Biol Cell. 2017 Sep 1;28(18):2434-2448.
• Feng L, Shi Z, and Chen X. 2017. Enhancer of polycomb coordinates multiple signaling pathways to promote both cyst and germline stem cell differentiation in the Drosophila adult testis. PLoS Genet. 2017 Feb 14;13(2):e1006571.
• Ferguson CH, and Zhao H. 2017. Simultaneous Loss of NCKX4 and CNG Channel Desensitization Impairs Olfactory Sensitivity. J Neurosci. 2017 Jan 4;37(1):110-119.
• Oliver RA, Li R, and Townsend CA. 2017. Monobactam formation in sulfazecin by a nonribosomal peptide synthetase thioesterase. Nat Chem Biol. 2018 Jan;14(1):5-7. doi: 10.1038/nchembio.2526. Epub 2017 Nov 20.
• Balagopal V, and Beemon KL. 2017. Rous Sarcoma Virus RNA Stability Element Inhibits Deadenylation of mRNAs with Long 3’UTRs. Viruses. 2017 Aug 1;9(8).
• Cangialosi A, Yoon C, Liu J, Huang Q, Guo J, Nguyen TD, Gracias DH, Schulman R. 2017. DNA sequence-directed shape change of photopatterned hydrogels via high-degree swelling.Science. 2017 Sep 15;357(6356):1126-1130.
• Winans S, Larue RC, Abraham CM, Shkriabai N, Skopp A, Winkler D, Kvaratskhelia M, and Beemon KL. 2017. The FACT Complex Promotes Avian Leukosis Virus DNA Integration. J Virol. 2017 Mar 13;91(7). pii: e00082-17.
• Yang SY, Chang YC, Wan YH, Whitworth C, Baxter EM, Primus S, Pi H, and Van Doren M. 2017.Control of a Novel Spermatocyte-Promoting Factor by the Male Germline Sex Determination Factor PHF7 of Drosophila melanogaster. Genetics. 2017 Aug;206(4):1939-1949.
• Del Dotto V, Mishra P, Vidoni S, Fogazza M, Maresca A, Caporali L, McCaffery JM, Cappelletti M, Baruffini E, Lenaers G, Chan D, Rugolo M, Carelli V, and Zanna C. 2017. OPA1 Isoforms in the Hierarchical Organization of Mitochondrial Functions. Cell Rep. 2017 Jun 20;19(12):2557-2571.
• Feng Y, Liu X, Huynh KA, McCaffery JM, Mao L, Gao S, and Chen KL. 2017. Heteroaggregation of Graphene Oxide with Nanometer- and Micrometer-Sized Hematite Colloids: Influence on Nanohybrid Aggregation and Microparticle Sedimentation. Environ Sci Technol. 2017 Jun 20;51(12):6821-6828.
• Mohammed AM, Šulc P, Zenk J, and Schulman R. 2017. Self-assembling DNA nanotubes to connect molecular landmarks. Nat Nanotechnol. 2017 May;12(4):312-316.
• Jin Q, Li M, Polat B, Paidi SK, Dai A, Zhang A, Pagaduan JV, Barman I, and Gracias DH. 2017. Mechanical Trap Surface-Enhanced Raman Spectroscopy for Three-Dimensional Surface Molecular Imaging of Single Live Cells. Angew Chem Int Ed Engl. 2017 Mar 27;56(14):3822-3826.
• Hickey JW, Vicente FP, Howard GP, Mao HQ, and Schneck JP. 2017. Biologically Inspired Design of Nanoparticle Artificial Antigen-Presenting Cells for Immunomodulation. Nano Lett. 2017 Nov 8;17(11):7045-7054.
• Ardoña HAM, Kale TS, Ertel A, and Tovar JD. 2017. Nonresonant and Local Field Effects in Peptidic Nanostructures Bearing Oligo(p-phenylenevinylene) Units. Langmuir. 2017 Aug 1;33(30):7435-7445.
• Chen CM, Orefice LL, Chiu SL, LeGates TA, Hattar S, Huganir RL, Zhao H, Xu B, and Kuruvilla R. 2017. Wnt5a is essential for hippocampal dendritic maintenance and spatial learning and memory in adult mice. Proc Natl Acad Sci U S A. 2017 Jan 24;114(4):E619-E628.
• Liyanage W, Ardoña HA, Mao HQ, and Tovar JD. 2017. Cross-Linking Approaches to Tuning the Mechanical Properties of Peptide π-Electron Hydrogels.Bioconjug Chem. 2017 Mar 15;28(3):751-759.
• Winger J, and Bowman GD. 2017. The Sequence of Nucleosomal DNA Modulates Sliding by the Chd1 Chromatin Remodeler. J Mol Biol. 2017 Mar 24;429(6):808-822.
• Nodelman IM, Bleichert F, Patel A, Ren R, Horvath KC, Berger JM, and Bowman GD. 2017. Interdomain Communication of the Chd1 Chromatin Remodeler across the DNA Gyres of the Nucleosome. Mol Cell. 2017 Feb 2;65(3):447-459.
• Wu J, Qu W, Williford JM, Ren Y, Jiang X, Jiang X, Pan D, Mao HQ, and Luijten E. 2017. Improved siRNA delivery efficiency via solvent-induced condensation of micellar nanoparticles. Nanotechnology. 2017 May 19;28(20):204002.
• Liyanage W, Ardoña HA, Mao HQ, and Tovar JD. 2017. Cross-Linking Approaches to Tuning the Mechanical Properties of Peptide π-Electron Hydrogels. Bioconjug Chem. 2017 Mar 15;28(3):751-759.
• Lewis DM, Blatchley MR, Park KM,and Gerecht S. 2017.O2-controllable hydrogels for studying cellular responses to hypoxic gradients in three dimensions in vitro and in vivo. Nat Protoc. 2017 Aug;12(8):1620-1638.
• Smith Q, Chan XY, Carmo AM, Trempel M, Saunders M, and Gerecht S. 2017. Compliant substratum guides endothelial commitment from human pluripotent stem cells. Sci Adv. 2017 May 31;3(5):e1602883.
•Wei Z, Lewis DM, Xu Y, and Gerecht S. 2017. Dual Cross-Linked Biofunctional and Self-Healing Networks to Generate User-Defined Modular Gradient Hydrogel Constructs. Adv Healthc Mater. 2017 Aug;6(16).
• Eoh JH, Shen N, Burke JA, Hinderer S, Xia Z, Schenke-Layland K, and Gerecht S. 2017. Enhanced elastin synthesis and maturation in human vascular smooth muscle tissue derived from induced-pluripotent stem cells. Acta Biomater. 2017 Apr 1;52:49-59.
• Shea DJ, Li YW, Stebe KJ, and Konstantopoulos K. 2017. E-selectin-mediated rolling facilitates pancreatic cancer cell adhesion to hyaluronic acid. FASEB J. 2017 Nov;31(11):5078-5086.
• Chen Z, Xing L, Fan Q, Cheetham AG, Lin R, Holt B, Chen L, Xiao Y, and Cui H. 2017. Drug-Bearing Supramolecular Filament Hydrogels as Anti-Inflammatory Agents. Theranostics. 2017 May 12;7(7):2003-2014.
• Shi Y, Hu Y, Ochbaum G, Lin R, Bitton R, Cui H, and Azevedo HS. 2017. Enzymatic activation of cell-penetrating peptides in self-assembled nanostructures triggers fibre-to-micelle morphological transition. Chem Commun (Camb). 2017 Jul 4;53(52):7037-7040.
• Dhandhukia JP, Shi P, Peddi S, Li Z, Aluri S, Ju Y, Brill D, Wang W, Janib SM, Lin YA, Liu S, Cui H, and MacKay JA. 2017. Bifunctional Elastin-like Polypeptide Nanoparticles Bind Rapamycin and Integrins and Suppress Tumor Growth in Vivo. Bioconjug Chem. 2017 Nov 15;28(11):2715-2728.

2016

• Li M, Banerjee SR, Zheng C, Pomper MG, and Barman I. 2016. Ultrahigh affinity Raman probe for targeted live cell imaging of prostate cancer. Chem Sci. 2016 Nov 1;7(11):6779-6785.
• Santos JL, Ren Y, Vandermark J, Archang MM, Williford JM, Liu HW, Lee J, Wang TH, and Mao HQ. 2016. Continuous Production of Discrete Plasmid DNA-Polycation Nanoparticles Using Flash Nanocomplexation. Small. 2016 Sep 22. doi: 10.1002/smll.201601425. PMID: 27717227
• Liu AS, Wang H, Copeland CR, Chen CS, Shenoy VB, and Reich DH. 2016. Matrix viscoplasticity and its shielding by active mechanics in microtissue models: experiments and mathematical modeling. Sci Rep. 2016 Sep 27;6:33919. doi: 10.1038/srep33919. PMID: 27671239
• Levendosky RF, Sabantsev A, Deindl S, and Bowman GD. 2016. The Chd1 chromatin remodeler shifts hexasomes unidirectionally. Elife. 2016 Dec 29;5. pii: e21356.
• Keenan WT, Rupp AC, Ross RA, Somasundaram P, Hiriyanna S, Wu Z, Badea TC, Robinson PR, Lowell BB, and Hattar SS. 2016. A visual circuit uses complementary mechanisms to support transient and sustained pupil constriction. Elife. 2016 Sep 26;5. pii: e15392. doi: 10.7554/eLife.15392.
• Jukam D, Viets K, Anderson C, Zhou C, DeFord P, Yan J, Cao J, Johnston RJ Jr. 2016. The insulator protein BEAF-32 is required for Hippo pathway activity in the terminal differentiation of neuronal subtypes. Development. 2016 Jul 1;143(13):2389-97. doi: 10.1242/dev.134700. Epub 2016 May 25.
PMID: 27226322
• Roman JA, Reucroft I, Martin RA, Hurtado A, and Mao HQ. 2016.
Local Release of Paclitaxel from Aligned, Electrospun Microfibers Promotes Axonal Extension. Adv Healthc Mater. 2016 Sep 1. doi: 10.1002/adhm.201600415. [Epub ahead of print]
• Friedrich SM, Zec HC, and Wang TH. 2016. Analysis of single nucleic acid molecules in micro- and nano-fluidics. Lab Chip. 2016 Mar 7;16(5):790-811. doi: 10.1039/c5lc01294e. Review. PMID: 26818700
• Prosser DC, and Wendland B. 2016. DePFth Perception in Clathrin-Mediated Endocytosis. Dev Cell. 2016 Jun 6;37(5):387-8. doi: 10.1016/j.devcel.2016.05.017. PMID: 27270034
• Nodelman IM, Horvath KC, Levendosky RF, Winger J, Ren R, Patel A, Li M, Wang MD, Roberts E, and Bowman GD. 2016. The Chd1 chromatin remodeler can sense both entry and exit sides of the nucleosome. Nucleic Acids Res. 2016 Sep 19;44(16):7580-91. doi: 10.1093/nar/gkw406. Epub 2016 May 12. PMID: 27174939
• Li X, Kozielski K, Cheng YH, Liu H, Zamboni CG, Green J, and Mao HQ. 2016Nanoparticle-mediated conversion of primary human astrocytes into neurons and oligodendrocytes. Biomater Sci. 2016 Jun 21;4(7):1100-12. doi: 10.1039/c6bm00140h.
PMID: 27328202
• Wang Y, Cheetham AG, Angacian G, Su H, Xie L, and Cui H. 2016. Peptide-drug conjugates as effective prodrug strategies for targeted delivery. Adv Drug Deliv Rev. 2016 Jun 29. pii: S0169-409X(16)30208-3. doi: 10.1016/j.addr.2016.06.015. [Epub ahead of print] Review. PMID: 27370248
• Wang YY, Schroeder HA, Nunn KL, Woods K, Anderson DJ, Lai SK, and Cone RA. 2016. Diffusion of Immunoglobulin G in Shed Vaginal Epithelial Cells and in Cell-Free Regions of Human Cervicovaginal Mucus. PLoS One. 2016 Jun 30;11(6):e0158338. doi: 10.1371/journal.pone.0158338. eCollection 2016. PMID: 27362256
• Wu TH, Sagullo E, Case D, Zheng X, Li Y, Hong JS, TeSlaa T, Patananan AN, McCaffery JM, Niazi K, Braas D, Koehler CM, Graeber TG, Chiou PY, and Teitell MA. 2016. Mitochondrial Transfer by Photothermal Nanoblade Restores Metabolite Profile in Mammalian Cells. Cell Metab. 2016 May 10;23(5):921-9. doi: 10.1016/j.cmet.2016.04.007.
• Su H, Zhang P, Cheetham AG, Koo JM, Lin R, Masood A, Schiapparelli P, Quiñones-Hinojosa A, and Cui H. 2016. Supramolecular Crafting of Self-Assembling Camptothecin Prodrugs with Enhanced Efficacy against Primary Cancer Cells. Theranostics. 2016 Apr 28;6(7):1065-74. doi: 10.7150/thno.15420. eCollection 2016. PMID: 27217839
• Luo H, Raciti D, Wang C, and Herrera-Alonso M. 2016. Macromolecular Brushes as Stabilizers of Hydrophobic Solute Nanoparticles.
Mol Pharm. 2016 Jun 6;13(6):1855-65. doi: 10.1021/acs.molpharmaceut.6b00019. Epub 2016 Apr 22. PMID: 27035279
• Lewis DM, Park KM, Tang V, Xu Y, Pak K, Eisinger-Mathason TS, Simon MC, AND Gerecht S. 2016. Intratumoral oxygen gradients mediate sarcoma cell invasion. Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9292-7. doi: 10.1073/pnas.1605317113. Epub 2016 Aug 2.
PMID: 27486245
• McKnight JN, Tsukiyama T, and Bowman GD. 2016. Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler.
Genome Res. 2016 May;26(5):693-704. doi: 10.1101/gr.199919.115. Epub 2016 Mar 18.PMID: 26993344
• Williford JM, Archang MM, Minn I, Ren Y, Wo M, Vandermark J, Fisher PB, Pomper MG, and Mao HQ. 2016. Critical Length of PEG Grafts on lPEI/DNA Nanoparticles for Efficient in Vivo Delivery. ACS Biomater Sci Eng. 2016 Apr 11;2(4):567-578. Epub 2016 Mar 3.
• Li X, Tzeng SY, Liu X, Tammia M, Cheng YH, Rolfe A, Sun D, Zhang N, Green JJ, Wen X, and Mao HQ. 2016 Nanoparticle-mediated transcriptional modification enhances neuronal differentiation of human neural stem cells following transplantation in rat brain.Biomaterials. 2016 Apr;84:157-66. doi: 10.1016/j.biomaterials.2016.01.037. Epub 2016 Jan 20. PMID: 26828681
• Mao X, Xu J, and Cui H. 2016. Functional nanoparticles for magnetic resonance imaging. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2016 Nov;8(6):814-841. doi: 10.1002/wnan.1400. Review. PMID: 27040463
• Hielscher A, Ellis K, Qiu C, Porterfield J, and Gerecht S. 2016.
Fibronectin Deposition Participates in Extracellular Matrix Assembly and Vascular Morphogenesis. PLoS One. 2016 Jan 26;11(1):e0147600. doi: 10.1371/journal.pone.0147600. eCollection 2016. PMID: 26811931
•Shen YI, Cho H, Papa AE, Burke JA, Chan XY, Duh EJ, and Gerecht S. 2016. Engineered human vascularized constructs accelerate diabetic wound healing. Biomaterials. 2016 Sep;102:107-19. doi: 10.1016/j.biomaterials.2016.06.009. Epub 2016 Jun 4. PMID: 27328431
• Li X, Tzeng SY, Liu X, Tammia M, Cheng YH, Rolfe A, Sun D, Zhang N, Green JJ, Wen X, and Mao HQ. 2016. Nanoparticle-mediated transcriptional modification enhances neuronal differentiation of human neural stem cells following transplantation in rat brain. Biomaterials. 2016 Apr;84:157-66. doi: 10.1016/j.biomaterials.2016.01.037. Epub 2016 Jan 20.
• Katt ME, Xu ZS, Gerecht S, Searson PC. 2016. Human Brain Microvascular Endothelial Cells Derived from the BC1 iPS Cell Line Exhibit a Blood-Brain Barrier Phenotype. PLoS One. 2016 Apr 12;11(4):e0152105. doi: 10.1371/journal.pone.0152105. eCollection 2016. PMID: 27070801
• Xie, K. Y., Alam, Z., Caffee, A., and Hemker, K. (2016). Pyramidal I slip in c-axis compressed Mg single crystals. Scripta Materialia. 112. 75–78.
• McCue, Ian; Ryan, Stephen; and Hemker, Kevin; et al. 2016. Size Effects in the Mechanical Properties of Bulk Bicontinuous Ta/Cu Nanocomposites Made by Liquid Metal Dealloying. ADVANCED ENGINEERING MATERIALS Volume: 18 Issue: 1 Pages: 46-50 Published: JAN 2016
• Zhang, Y (Zhang, Y.); Ha, S (Ha, S.); Sharp, K (Sharp, K.); Guest, JK (Guest, J. K.); Weihs, TP (Weihs, T. P.); Hemker, KJ (Hemker, K. J.). 2016. Fabrication and mechanical characterization of 3D woven Cu lattice materials. MATERIALS & DESIGN Volume: 85 Pages: 743-751
• Lock LL, Reyes CD, Zhang P, and Cui H. 2016. Tuning Cellular Uptake of Molecular Probes by Rational Design of Their Assembly into Supramolecular Nanoprobes. J Am Chem Soc. 2016 Mar 16;138(10):3533-40. doi: 10.1021/jacs.6b00073. Epub 2016 Mar 3.
• Sanders AM, Magnanelli TJ, Bragg AE, AND Tovar JD. 2016. Photoinduced Electron Transfer within Supramolecular Donor-Acceptor Peptide Nanostructures under Aqueous Conditions. J Am Chem Soc. 2016 Mar 16;138(10):3362-70. doi: 10.1021/jacs.5b12001. Epub 2016 Mar 1.
• Hu Y, Lin R, Zhang P, Fern J, Cheetham AG, Patel K, Schulman R, Kan C, and Cui H. 2016. Electrostatic-Driven Lamination and Untwisting of β-Sheet Assemblies. ACS Nano. 2016 Jan 26;10(1):880-8. doi: 10.1021/acsnano.5b06011. Epub 2015 Dec 10.
• Lu YW, Galbraith L, Herndon JD, Lu YL, Pras-Raves M, Vervaart M, Van Kampen A, Luyf A, Koehler CM, McCaffery JM, Gottlieb E, Vaz FM, and Claypool SM. 2016. Defining functional classes of Barth syndrome mutation in humans. Hum Mol Genet. 2016 Feb 16. pii: ddw046. [Epub ahead of print]
• Whitfield ST, Burston HE, Bean BD, Raghuram N, Maldonado-Báez L, Davey M, Wendland B, and Conibear E. 2016. The alternate AP-1 adaptor subunit Apm2 interacts with the Mil1 regulatory protein and confers differential cargo sorting. Mol Biol Cell. 2016 Feb 1;27(3):588-98. doi: 10.1091/mbc.E15-09-0621. Epub 2015 Dec 10.
• Ge Z, Quek BL, Beemon KL, and Hogg JR. 2016. Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway. Elife. 2016 Jan 8;5. pii: e11155. doi: 10.7554/eLife.11155.
• Feliziani C, Valdez Taubas J, Moyano S, Quassollo G, Poprawski JE, Wendland B, and Touz MC. 2016. Vestiges of Ent3p/Ent5p function in the giardial epsin homolog. Biochem Biophys Acta. 2016 Apr;1863(4):749-59. doi: 10.1016/j.bbamcr.2016.02.001. Epub 2016 Feb 2.
• Phelan WA, Koohpayeh SM, Cottingham P, Tutmaher JA, Leiner JC, Lumsden MD, Lavelle CM, Wang XP, Hoffmann C, Siegler MA, Haldolaarachchige N, Young DP, McQueen TM. 2016. On the Chemistry and Physical Properties of Flux and Floating Zone Grown SmB6 Single Crystals. Sci Rep. 2016 Feb 19;6:20860. doi: 10.1038/srep20860.
• Hu Y, Lin R, Zhang P, Fern J, Cheetham AG, Patel K, Schulman R, Kan C, and Cui H. 2016. β ACS Nano. 2016 Jan 26;10(1):880-8. doi: 10.1021/acsnano.5b06011. Epub 2015 Dec 10. PMID: 26646791
• Hielscher A, Ellis K, Qiu C, Porterfield J, and Gerecht S. 2016. Fibronectin Deposition Participates in Extracellular Matrix Assembly and Vascular Morphogenesis. PLoS One. 2016 Jan 26;11(1):e0147600. doi: 10.1371/journal.pone.0147600. eCollection 2016.
• Niederer RO, Papadopoulos N, and Zappulla DC. 2016. Identification of novel noncoding transcripts in telomerase-negative yeast using RNA-seq. Sci Rep. 2016 Jan 20;6:19376. doi: 10.1038/srep19376.

2015

• Xie, K. Y., An, Q., Toksoy, M. F., McCauley, J. W., Haber, R. A., Goddard, III, W. A., Hemker, K. (2015). Atomic-Level Understanding of “Asymmetric Twins” in Boron Carbide. Physical review letters. 115(17). 175501.
• Su H, Koo JM, and Cui H. 2016. One-component nanomedicine. J Control Release. 2015 Dec 10;219:383-95. doi: 10.1016/j.jconrel.2015.09.056. Epub 2015 Sep 28. Review. PMID: 26423237
• Rottmann, P., Hemker, K. (2015). In Situ Analysis of the Fracture Behavior of Nanocrystalline Copper Using Precession-Assisted Crystal Orientation. Mapping. Microscopy and Microanalysis. 21(S3). 273–274.
• Ryan, S. M., Szyniszewski, S., Ha, S., Xiao, R., Nguyen, T., Sharp, K. W., Weihs, T., Guest, J., Hemker, K. (2015). Damping behavior of 3D woven metallic lattice materials. Scripta Materialia. 106. 1–4.
• Smirnova L., G. Harris, J. Delp, M. Valadares, D. Pamies, H.T. Hogberg, T. Waldmann, M. Leist, and T. Hartung. 2015. A LUHMES 3D domaminergic neuronal model for neurotoxicity testing allowing long-term exposure and cellular resilience analysis. Archiv.Toxicol. 90 (11): 2725-2743.
• Zhang, Y., Ha, S., Sharp, K., Guest, J., Weihs, T., Hemker, K. (2015). Fabrication and mechanical characterization of 3D woven Cu lattice materials. Materials & Design. 85. 743–751.
• Williford JM, Santos JL, Shyam R, and Mao HQ. 2015. Shape Control in Engineering of Polymeric Nanoparticles for Therapeutic Delivery. Biomater Sci. 2015 Jul;3(7):894-907. doi: 10.1039/C5BM00006H.
• Hickey JW, Santos JL, Williford JM, and Mao HQ. 2015. Control of polymeric nanoparticle size to improve therapeutic delivery. J Control Release. 2015 Dec 10;219:536-47. doi: 10.1016/j.jconrel.2015.10.006. Epub 2015 Oct 9.
• Xie, K. Y., Livi, K. J., McCauley, J. W., Hemker, K. (2015). Precipitation of AlN in a commercial hot-pressed boron carbide. Scripta Materialia. 101. 95–98.
• Dixit, N., Xie, K. Y., Hemker, K., Ramesh, K. T. (2015). Microstructural evolution of pure magnesium under high strain rate loading. Acta Materialia. 87. 56-67.
• Besar K, Ardoña HA, Tovar JD, and Katz HE. 2015. Demonstration of Hole Transport and Voltage Equilibration in Self-Assembled π-Conjugated Peptide Nanostructures Using Field-Effect Transistor Architectures. ACS Nano. 2015 Dec 22;9(12):12401-9. doi: 10.1021/acsnano.5b05752. Epub 2015 Nov 17.
• Ardoña HA, and Tovar JD. 2015. Peptide π-Electron Conjugates: Organic Electronics for Biology? Bioconjug Chem. 2015 Dec 16;26(12):2290-302. doi: 10.1021/acs.bioconjchem.5b00497. Epub 2015 Oct 16.
• Cheetham AG, Keith D, Zhang P, Lin R, Su H, and Cui H. 2015. Targeting Tumors with Small Molecule Peptides. Curr Cancer Drug Targets. 2015 Nov 30. [Epub ahead of print]
• Lowenthal J, and Gerecht S. 2015. Stem cell-derived vasculature: A potent and multidimensional technology for basic research, disease modeling, and tissue engineering. Biochem Biophys Res Commun. 2015 Sep 30. pii: S0006-291X(15)30644-6. doi: 10.1016/j.bbrc.2015.09.127. [Epub ahead of print]
• Chan XY, Black R, Dickerman K, Federico J, Lévesque M, Mumm J, and Gerecht S. 2015. Three-Dimensional Vascular Network Assembly From Diabetic Patient-Derived Induced Pluripotent Stem Cells.
• Blatchley M, Park KM, and Gerecht S. 2015. Designer Hydrogels for Precision Control of Oxygen Tension and Mechanical Properties. J Mater Chem B Mater Biol Med. 2015 Oct 28;3(40):7939-7949. Epub 2015 Aug 5. Arterioscler Thromb Vasc Biol. 2015 Dec;35(12):2677-85. doi: 10.1161/ATVBAHA.115.306362. Epub 2015 Oct 8.
• Vevea JD, Garcia EJ, Chan RB, Zhou B, Schultz M, Di Paolo G, McCaffery JM, and Pon LA. 2015. Role for Lipid Droplet Biogenesis and Microlipophagy in Adaptation to Lipid Imbalance in Yeast. Dev Cell. 2015 Dec 7;35(5):584-99. doi: 10.1016/j.devcel.2015.11.010.
• Shen YI, Song HH, Papa AE, Burke JA, Volk SW, and Gerecht S. 2015. Acellular Hydrogels for Regenerative Burn Wound Healing: Translation from a Porcine Model. J Invest Dermatol. 2015 Oct;135(10):2519-29. doi: 10.1038/jid.2015.182. Epub 2015 May 8.
• Mefford MA, and Zappulla DC. 2015. Physical Connectivity Mapping by Circular Permutation of Human Telomerase RNA Reveals New Regions Critical for Activity and Processivity. Mol Cell Biol. 2015 Oct 26;36(2):251-61. doi: 10.1128/MCB.00794-15.
• Lewis DM, Abaci HE, Xu Y, and Gerecht S. 2015. Endothelial progenitor cell recruitment in a microfluidic vascular model. Biofabrication. 2015 Dec 22;7(4):045010. doi: 10.1088/1758-5090/7/4/045010.
• Patel A, Yamashita N, Ascaño M, Bodmer D, Boehm E, Bodkin-Clarke C, Ryu YK, and Kuruvilla R. 2015. RCAN1 links impaired neurotrophin trafficking to aberrant development of the sympathetic nervous system in Down syndrome. Nat Commun. 2015 Dec 14;6:10119. doi: 10.1038/ncomms10119.
• Sandlin CW, Zaccai NR, and Fleming KG.. 2015. Skp Trimer Formation Is Insensitive to Salts in the Physiological Range. Biochemistry. 2015 Dec 8;54(48):7059-62. doi: 10.1021/acs.biochem.5b00806. Epub 2015 Nov 24.
• Kim A, and Cunningham KW. 2015. A LAPF/phafin1-like protein regulates TORC1 and lysosomal membrane permeabilization in response to endoplasmic reticulum membrane stress. Mol Biol Cell. 2015 Dec 15;26(25):4631-45. doi: 10.1091/mbc.E15-08-0581. Epub 2015 Oct 28.
• Shaikh SR, Boyle S, and Edidin M. 2015. A high fat diet containing saturated but not unsaturated fatty acids enhances T cell receptor clustering on the nanoscale. Prostaglandins Leukot Essent Fatty Acids. 2015 Sep;100:1-4. doi: 10.1016/j.plefa.2015.05.001. Epub 2015 May 29.
• Tarayrah L, Li Y, Gan Q, and Chen X. 2015. Epigenetic regulator Lid maintains germline stem cells through regulating JAK-STAT signaling pathway activity. Biol Open. 2015 Oct 21;4(11):1518-27. doi: 10.1242/bio.013961.
• Hauk G, and Bowman GD. 2015. Formation of a Trimeric Xpo1-Ran[GTP]-Ded1 Exportin Complex Modulates ATPase and Helicase Activities of Ded1. PLoS One. 2015 Jun 29;10(6):e0131690. doi: 10.1371/journal.pone.0131690. eCollection 2015.
• Petrus E, Rodriguez G, Patterson R, Connor B, Kanold PO, and Lee HK. 2015. Vision loss shifts the balance of feedforward and intracortical circuits in opposite directions in mouse primary auditory and visual cortices. J Neurosci. 2015 Jun 10;35(23):8790-801. doi: 10.1523/JNEUROSCI.4975-14.2015.
• Xie J, Wooten M, Tran V, Chen BC, Pozmanter C, Simbolon C, Betzig E, and Chen X. 2015. Histone H3 Threonine Phosphorylation Regulates Asymmetric Histone Inheritance in the Drosophila Male Germline. Cell. 2015 Nov 5;163(4):920-33. doi: 10.1016/j.cell.2015.10.002. Epub 2015 Oct 29.
• Danoff EJ, and Fleming KG. 2015. Aqueous, Unfolded OmpA Forms Amyloid-Like Fibrils upon Self-Association. PLoS One. 2015 Jul 21;10(7):e0132301. doi: 10.1371/journal.pone.0132301. eCollection 2015.
• Danoff EJ, and Fleming KG. 2015. Membrane defects accelerate outer membrane β-barrel protein folding. Biochemistry. 2015 Jan 20;54(2):97-9. doi: 10.1021/bi501443p. Epub 2014 Dec 22.
• Lim C, Gandhi S, Biniossek ML, Feng L, Schilling O, Urban S, and Chen X. 2015. An Aminopeptidase in the Drosophila Testicular Niche Acts in Germline Stem Cell Maintenance and Spermatogonial Dedifferentiation. Cell Rep. 2015 Oct 13;13(2):315-25. doi: 10.1016/j.celrep.2015.09.001. Epub 2015 Oct 1.
• Prosser DC, Pannunzio AE, Brodsky JL, Thorner J, Wendland B, and O’Donnell AF. 2015. α-Arrestins participate in cargo selection for both clathrin-independent and clathrin-mediated endocytosis. J Cell Sci. 2015 Nov 15;128(22):4220-34. doi: 10.1242/jcs.175372. Epub 2015 Oct 12.
• Chen H, Ren S, Clish C, Jain M, Mootha V, McCaffery JM, AND Chan DC. 2015. Titration of mitochondrial fusion rescues Mff-deficient cardiomyopathy. J Cell Biol. 2015 Nov 23;211(4):795-805. doi: 10.1083/jcb.201507035.
• Bradford MK, Whitworth K, and Wendland B. 2015. Pan1 regulates transitions between stages of clathrin-mediated endocytosis. Mol Biol Cell. 2015 Apr 1;26(7):1371-85. doi: 10.1091/mbc.E14-11-1510. Epub 2015 Jan 28.
• Deranieh RM, Shi Y, Tarsio M, Chen Y, McCaffery JM, Kane PM, and Greenberg ML. 2015. Perturbation of the Vacuolar ATPase: A NOVEL CONSEQUENCE OF INOSITOL DEPLETION. J Biol Chem. 2015 Nov 13;290(46):27460-72. doi: 10.1074/jbc.M115.683706. Epub 2015 Aug 31.
• Friedman JR, Mourier A, Yamada, McCaffery JM, AND Nunnari J. 2015. MICOS coordinates with respiratory complexes and lipids to establish mitochondrial inner membrane architecture. Elife. 2015 Apr 28;4. doi: 10.7554/eLife.07739.

2014

• Ye M, Sanchez HM, Hultz M, Yang Z, Bogorad M, Wong AD, and Searson PC.2014.Brain microvascular endothelial cells resist elongation due to curvature and shear stress. Sci Rep. 2014 Apr 15;4:4681.
• Eun SH, Shi Z, Cui K, Zhao K, and Chen X. 2014. A non-cell autonomous role of E(z) to prevent germ cells from turning on a somatic cell marker. Science. 2014 Mar 28;343(6178):1513-6.
• Beh CW, Pan D, Lee J, Jiang X, Liu KJ, Mao HQ,and Wang TH. 2014. Direct interrogation of DNA content distribution in nanoparticles by a novel microfluidics-based single-particle analysis. Nano Lett. 2014 Aug 13;14(8):4729-35.
• Song Y, Liu KJ, and Wang TH. 2014. Elimination of ligation dependent artifacts in T4 RNA ligase to achieve high efficiency and low bias microRNA capture. PLoS One. 2014 Apr 10;9(4):e94619.
• Wall BD, Zhou Y, Mei S, Ardoña HA, Ferguson AL,and Tovar JD. 2014. Variation of Formal Hydrogen-Bonding Networks within Electronically Delocalized π-Conjugated Oligopeptide Nanostructures. Langmuir. 2014 Sep 15. [Epub ahead of print]
• Wall BD, Zacca AE, Sanders AM, Wilson WL, Ferguson AL,and Tovar JD. 2014. Supramolecular polymorphism: tunable electronic interactions within π-conjugated peptide nanostructures dictated by primary amino acid sequence. Langmuir. 2014 May 27;30(20):5946-56.
• Gao M, Maynard KR, Chokshi V, Song L, Jacobs C, Wang H, Tran T, Martinowich K, and Lee HK.2014. Rebound potentiation of inhibition in juvenile visual cortex requires vision-induced BDNF expression. J Neurosci. 2014 Aug 6;34(32):10770-9.
• Luo H, Santos JL, and Herrera-Alonso M. 2014. Toroidal structures from brush amphiphiles.Chem Commun (Camb). 2014 Jan 18;50(5):536-8.
• Schmidt TM, Alam NM, Chen S, Kofuji P, Li W, Prusky GT, and Hattar S. 2014. A role for melanopsin in alpha retinal ganglion cells and contrast detection.Neuron. 2014 May 21;82(4):781-8.
• Houtz J, and Kuruvilla R. 2014. VIP Pipes Up: Neuronal Signals Direct Tubulogenesis. Dev Cell. 2014 Aug 25;30(4):361-2.
• Phatarphekar A, Buss JM, Rokita SE. 2014. Iodotyrosine deiodinase: a unique flavoprotein present in organisms of diverse phyla. Mol Biosyst. 2014 Jan;10(1):86-92.
• Zayats M, Brenner AJ, and Searson PC. 2014. Protein imprinting in polyacrylamide-based gels. Biomaterials. 2014 Oct;35(30):8659-68.
• Stroka KM, Jiang H, Chen SH, Tong Z, Wirtz D, Sun SX, Konstantopoulos K. 2014.Water permeation drives tumor cell migration in confined microenvironments. Cell. 2014 Apr 24;157(3):611-23.
• Abaci HE, Shen YI, Tan S, and Gerecht S.2014. Recapitulating physiological and pathological shear stress and oxygen to model vasculature in health and disease.Sci Rep. 2014 May 13;4:4951.
• Park KM, and Gerecht S. 2014. Hypoxia-inducible hydrogels. Nat Commun. 2014 Jun 9;5:4075. doi: 10.1038/ncomms5075.
• Alvaro CG, O’Donnell AF, Prosser DC, Augustine AA, Goldman A, Brodsky JL, Cyert MS, Wendland B, and Thorner J. 2014. Specific α-arrestins negatively regulate Saccharomyces cerevisiae pheromone response by down-modulating the G-protein coupled receptor Ste2. Mol Cell Biol. 2014 May 12. [Epub ahead of print]
• Zhao R, Chen CS, and Reich DH. 2014. Force-driven evolution of mesoscale structure in engineered 3D microtissues and the modulation of tissue stiffening. Biomaterials. 2014 Jun;35(19):5056-64. doi: 10.1016/j.biomaterials.2014.02.020. Epub 2014 Mar 12. PMID: 24630092
• Lang MJ, Martinez-Marquez JY, Prosser DC, Ganser LR, Buelto D, Wendland B, and Duncan MC. 2014. Glucose Starvation Inhibits Autophagy via Vacuolar Hydrolysis and Induces Plasma Membrane Internalization by Down-regulating Recycling. J Biol Chem. 2014 Jun 13;289(24):16736-16747. Epub 2014 Apr 21.
• Chen Z, Zhang P, Cheetham AG, Moon JH, Moxley JW Jr, Lin YA, and Cui H. 2014. Controlled release of free doxorubicin from peptide-drug conjugates by drug loading. J Control Release. 2014 Jun 2. pii: S0168-3659(14)00354-X. doi: 10.1016/j.jconrel.2014.05.051. [Epub ahead of print]
PMID: 24892976
• Zhang S, Liu X, Barreto-Ortiz SF, Yu Y, Ginn BP, DeSantis NA, Hutton DL, Grayson WL, Cui FZ, Korgel BA, Gerecht S,and Mao HQ. 2014. Creating polymer hydrogel microfibres with internal alignment via electrical and mechanical stretching. Biomaterials. 2014 Mar;35(10):3243-51.
• Lin YA, Ou YC, Cheetham AG,and Cui H. 2014. Rational design of MMP degradable peptide-based supramolecular filaments. Biomacromolecules. 2014 Apr 14;15(4):1419-27.
• Cheetham AG, Ou YC, Zhang P, and Cui H. 2014. Linker-determined drug release mechanism of free camptothecin from self-assembling drug amphiphiles.hem Commun (Camb). 2014 Jun 7;50(45):6039-42.
• Cheong FK, Feng L, Sarkeshik A, Yates JR 3rd, and Schroer TA. 2014. Dynactin integrity depends upon direct binding of dynamitin to Arp1. Mol Biol Cell. 2014 Jul 15;25(14):2171-80.
• Huynh, Khanh An; McCaffery, JM.; Chen,and Kai Loon. 2014. Heteroaggregation Reduces Antimicrobial Activity of Silver Nanoparticles: Evidence for Nanoparticle–Cell Proximity Effect.Environ. Sci. Technol. Lett., 2014, 1 (9), pp 361–366.
• Suarez A, Ueno T, Huebner R, McCaffery JM,and Inoue T .2014. Bin/Amphiphysin/Rvs (BAR) family members bend membranes in cells.Sci Rep. 2014 May 6;4:4693. doi: 10.1038/srep04693.
• Capuano CM, Grzesik P, Kreitler D, Pryce EN, Desai KV, Coombs G, McCaffery JM, and Desai PJ. 2014.A hydrophobic domain within the small capsid protein of Kaposi’s sarcoma-associated herpesvirus is required for assembly. J Gen Virol. ( 8):1755-69. doi: 10.1099/vir.0.064303-0. Epub 2014 May 13.
• Whitworth K, Bradford MK, Camara N, and Wendland B. 2014. Targeted Disruption of an EH-domain Protein Endocytic Complex, Pan1-End3. Traffic. 2014 Jan;15(1):43-59. doi: 10.1111/tra.12125. Epub 2013 Oct 31. PMID: 2411883610.
• Baile MG, Sathappa M, Lu YW, Pryce E, Whited K, McCaffery JM, Han X, Alder NN,and Claypool SM. 2014. Unremodeled and remodeled cardiolipin are functionally indistinguishable in yeast. J Biol Chem. 2014 Jan 17;289(3):1768-78.

2013

• Zhang P, Cheetham AG, Lin YA, and Cui H. 2013. Self-assembled Tat nanofibers as effective drug carrier and transporter. ACS Nano. 2013 Jul 23;7(7):5965-77.
• Lock LL, Cheetham AG, Zhang P, and Cui H. 2013. Design and construction of supramolecular nanobeacons for enzyme detection. ACS Nano. 2013 Jun 25;7(6):4924-32.
• Lin R, Cheetham AG, Zhang P, Lin YA, and Cui H. 2013. Supramolecular filaments containing a fixed 41% paclitaxel loading.Chem Commun (Camb). 2013 May 28;49(43):4968-70.
• Zhang P, Cheetham AG, Lock LL, and Cui H. 2013. Cellular uptake and cytotoxicity of drug-peptide conjugates regulated by conjugation site. Bioconjug Chem. 2013 Apr 17;24(4):604-13.
• Cheetham AG, Zhang P, Lin YA, Lock LL, and Cui H. 2013. Supramolecular nanostructures formed by anticancer drug assembly.J Am Chem Soc. 2013 Feb 27;135(8):2907-10.
• Jiang X, Qu W, Pan D, Ren Y, Williford JM, Cui H, Luijten E, and Mao HQ. 2013. Plasmid-templated shape control of condensed DNA-block copolymer nanoparticles. Adv Mater. 2013 Jan 11;25(2):227-32.
• Borden P, Houtz J, Leach SD,and Kuruvilla R. 2013. Sympathetic innervation during development is necessary for pancreatic islet architecture and functional maturation. Cell Rep. 2013 4(2):287-301.
• Zhao R, Boudou T, Wang WG, Chen CS, and Reich DH. 2013. Decoupling cell and matrix mechanics in engineered microtissues using magnetically actuated microcantilevers. Adv Mater. 25(12): 1699-705.
• Whitworth K, Bradford MK, Camara N, and Wendland B.. 2013. Targeted Disruption of an EH-domain Protein Endocytic Complex, Pan1-End3.[Epub ahead of print]
• Raman PS, Paul CD, Stroka KM, and Konstantopoulos K. 2013. Probing cell traction forces in confined microenvironments. Lab Chip.[ Epub ahead of print]
• Hung WC, Chen SH, Paul CD, Stroka KM, Lo YC, Yang JT, and Konstantopoulos K .2013. Distinct signaling mechanisms regulate migration in unconfined versus confined spaces. J. Cell Biol. 202(5): 807-24.
• Yang J, Hendricks W, Liu G, McCaffery JM, Kinzler KW, Huso DL, Vogelstein B, and Zhou S. 2013. A nanoparticle formulation that selectively transfects metastatic tumors in mice. Proc. Natl. Acad. Sci. 110(36): 14717-22.
• Kusuma S, Shen YI, Hanjaya-Putra D, Mali P, Cheng L,AND Gerecht S. 2013. Self-organized vascular networks from human pluripotent stem cells in a synthetic matrix. Proc. Natl. Acas. Sci. 110(31): 12601-6.
• Wang Y, Chou BK, Dowey S, He C, Gerecht S,and Cheng L. 2013. Scalable expansion of human induced pluripotent stem cells in the defined xeno-free E8 medium under adherent and suspension culture conditions. Stem Cell Research. 11(3): 1103-1116.
• Luitweiler EM, Henson BW, Pryce EN, Patel V, Coombs G, McCaffery JM, Desai PJ. 2013. Interactions of the Kaposi’s Sarcoma-associated herpesvirus nuclear egress complex: ORF69 is a potent factor for remodeling cellular membranes. J Virol. 87(7):3915-29. Epub 2013 Jan 30. PMID: 23365436.
• Guo Q, Koirala S, Perkins EM, McCaffery JM, Shaw JM. 2012. The mitochondrial fission adaptors Caf4 and Mdv1 are not functionally equivalent. PLoS One. 2012;7(12):e53523. doi: 10.1371/journal.pone.0053523. Epub 2012 Dec 31. PMID: 23300936
• Daniel Hagaman, Jacob Gredzik, Patricia A. Peart, J. Michael McCaffery, John D. Tovar, and Alexander Sidorenko. 2013. Block Copolymer Supramolecular Assembly using a Precursor to a Novel Conjugated Polymer. Polymer Chemistry. 4:1482-1490
• Tarayrah L, Herz HM, Shilatifard A, Chen X. 2013. Histone demethylase dUTX antagonizes JAK-STAT signaling to maintain proper gene expression and architecture of the Drosophila testis niche. Development. 140(5):1014-23. Epub 2013 Jan 30. PMID: 23364332
• Eun SH, Stoiber PM, Wright HJ, McMurdie KE, Choi CH, Gan Q, Lim C, and Chen X. 2013. MicroRNAs downregulate Bag of marbles to ensure proper terminal differentiation in the Drosophila male germline.Development. 140(1):23-30. Epub 2012 Nov 15. PMID: 23154414
• Chen SK, Chew KS, McNeill DS, Keeley PW, Ecker JL, Mao BQ, Pahlberg J, Kim B, Lee SC, Fox MA, Guido W, Wong KY, Sampath AP, Reese BE, Kuruvilla R, and Hattar S. 2013. Apoptosis regulates ipRGC spacing necessary for rods and cones to drive circadian photoentrainment. Neuron. 77(3):503-15. PMID: 23395376
• Ryu YK, Collins SE, Ho HY, Zhao H, and Kuruvilla R. 2013. An autocrine Wnt5a-Ror signaling loop mediates sympathetic target innervation. Dev Biol. 377(1):79-89. Epub 2013 Feb 27. PMID: 23454479
• Whitworth C, Jimenez E, and Van Doren M. 2012. Development of sexual dimorphism in the Drosophila testis. Spermatogenesis. 2(3):129-136. PMID: 23087832
• Abaci HE, Devendra R, Soman R, Drazer G, and Gerecht S. 2012. Microbioreactors to manipulate oxygen tension and shear stress in the microenvironment of vascular stem and progenitor cells. Biotechnol Appl Biochem.
2:97-105. PMID: 23586790
• Wanjare M, Kusuma S, and Gerecht S. 2013. Perivascular cells in blood vessel regeneration. Biotechnol J. 4:434-47. PMID: 23554249
• Hanjaya-Putra D, Shen YI, Wilson A, Fox-Talbot K, Khetan S, Burdick JA, Steenbergen C, and Gerecht S. 2013. Integration and regression of implanted engineered human vascular networks during deep wound healing. Stem Cells Transl Med. 4:297-306. Epub 2013 Mar 13. PMID: 23486832
• Serbo JV, and Gerecht S. 2013. Vascular tissue engineering: biodegradable scaffold platforms to promote angiogenesis. Stem Cell Res Ther. 4(1):8. [Epub ahead of print] PMID: 23347554
• Yeh TY, Kowalska AK, Scipioni BR, Cheong FK, Zheng M, Derewenda U, Derewenda ZS, and Schroer TA. 2013. Dynactin helps target Polo-like kinase 1 to kinetochores via its left-handed beta-helical p27 subunit. EMBO J. 32(7):1023-35. Epub 2013 Mar 1. PMCID: PMC3616283
• Stefan CP, Zhang N, Sokabe T, Rivetta A, Slayman CL, Montell C, and Cunningham KW. 2013. Activation of an essential calcium signaling pathway in Saccharomyces cerevisiae by Kch1 and Kch2, putative low-affinity potassium transporters. Eukaryot Cell. 12(2):204-14. Epub 2012 Nov 30. PMID: 23204190
• Pandey S, Gultepe E, and Gracias DH. 2013. Origami inspired self-assembly of patterned and reconfigurable particles. J Vis Exp. (72):e50022. doi: 10.3791/50022. PMID: 23407436
• Jamal M, Kadam SS, Xiao R, Jivan F, Onn TM, Fernandes R, Nguyen TD, and Gracias DH. 2013. Bio-Origami Hydrogel Scaffolds Composed of Photocrosslinked PEG Bilayers. Adv Healthc Mater. [Epub ahead of print] PMID: 23386382
• Damjanovic A, Miller BT, and Schleif R. 2013. Understanding the basis of a class of paradoxical mutations in AraC through simulations. Proteins. (3):490-8. Epub 2012 Dec 24. PMID: 23150197
• Grabias BM, and Konstantopoulos K. 2013. Notch4-dependent Antagonism of Canonical TGFβ1 Signaling Defines Unique Temporal Fluctuations of SMAD3 Activity in Sheared Proximal Tubular Epithelial Cells. Am J Physiol Renal Physiol. 2013 Apr 10. [Epub ahead of print] PMID: 23576639
• Song Y, Zhang Y, and Wang TH. 2013. Single quantum dot analysis enables multiplexed point mutation detection by gap ligase chain reaction. Small (7):1096-105. Epub 2012 Dec 13. PMID: 23239594
• Tovar JD. 2013. Supramolecular Construction of Optoelectronic Biomaterials. Acc Chem Res. 2013 Mar 11. [Epub ahead of print] PMID: 23477363

2012

• Joshi AS, Thompson MN, Huttemann M, and Greenberg ML 2012. Cardiolipin and mitochondrial phosphatidylethanolamine have overlapping functions in mitochondrial fusion in Saccharomyces cerevisiae. J. Biol Chem. 287(21): 17589-97. PMID: 22433850
• Prosser DC, and Wendland B. 2012. Conserved roles for yeast Rho1 and mammalian RhoA GTPases in clathrin-independent endocytosis. Small GTPases. 3(4):229-35. PMID: 23238351
• Yeh, T.Y., Quintyne, N.J., Scipioni, B.R. Eckley, D.M, and Schroer, T.A. (2012) Dynactin’s pointed end complex is a cargo-targeting module, Mol. Biol. Cell, 23, 3827-3837. PMCID:PMC3459859
• Pham A.H., J. Michael McCaffery, and David C. Chan. 2012. Mouse lines with photo-activatable mitochondria (PhAM) to study mitochondrial dynamics. Genesis. submitted.
• Huynh KA, McCaffery JM, and Chen KL. 2012. Heteroaggregation of Multiwalled Carbon Nanotubes and Hematite Nanoparticles: Rates and Mechanisms. Environ Sci Technol. 2012 Apr 30. [Epub ahead of print] PMID: 22545989
• Nguyen TT, Lewandowska A, Choi JY, Markgraf DF, Junker M, Bilgin M, Ejsing CS, Voelker DR, Rapoport TA, and Shaw JM. 2012. Gem1 and ERMES Do Not Directly Affect Phosphatidylserine Transport from ER to Mitochondria or Mitochondrial Inheritance. Traffic. 2012 Jun;13(6):880-90. PMID: 22409400
• Lijuan He, Christopher Serrano, Nitish Niphadkar, Nadia Shobnam, Kalina Hristova. 2012. Effect of the G375C and G346E Achondroplasia Mutations on FGFR3 Activation. PLoS One. 2012;7(4):e34808. Epub 2012 Apr 18. PMCID: PMC3329527
• Fernandes R, and Gracias DH. 2012. Self-folding polymeric containers for encapsulation and delivery of drugs. Adv Drug Deliv Rev. 2012 Mar 6. [Epub ahead of print] PMID: 22425612
• Cole SD, and Schleif R. 2012. A new and unexpected domain-domain interaction in the AraC protein. Proteins. 2012 May;80(5):1465-75. doi: 10.1002/prot.24044. Epub 2012 Mar 1. PMID: 22383259
• Zhang Y, Liu KJ, Wang TL, Shih IeM, and Wang TH. 2012. Mapping DNA quantity into electrophoretic mobility through quantum dot nanotethers for high-resolution genetic and epigenetic analysis. ACS Nano. 2012 Jan 24;6(1):858-64. Epub 2011 Dec 7. PMCID: PMC3273333
• Loo Y, Grigsby CL, Yamanaka YJ, Chellappan MK, Jiang X, Mao HQ, Leong KW. 2012. Comparative study of nanoparticle-mediated transfection in different GI epithelium co-culture models. J Control Release. 2012 Feb 3. [Epub ahead of print] PMID: 22326811
• Vagstad AL, Bumpus SB, Belecki K, Kelleher NL, and Townsend CA. 2012. Interrogation of global active site occupancy of a fungal iterative polyketide synthase reveals strategies for maintaining biosynthetic fidelity. J Am Chem Soc. 2012 Apr 18;134(15):6865-77.
• Jemc JC, Milutinovich AB, Weyers JJ, Takeda Y, and Van Doren M. 2012. raw Functions through JNK signaling and cadherin-based adhesion to regulate Drosophila gonad morphogenesis. Dev Biol. 2012 May 1. [Epub ahead of print]
• Wu I, Nahas Z, Kimmerling KA, Rosson GD, and Elisseeff JH. 2012. AN INJECTABLE ADIPOSE MATRIX FOR SOFT TISSUE RECONSTRUCTION. Plast Reconstr Surg. 2012 Feb 9. [Epub ahead of print] PMID: 22327888
• Diegelmann SR, Hartman N, Markovic N, Tovar JD. 2012. Synthesis and alignment of discrete polydiacetylene-peptide nanostructures. J Am Chem Soc. 2012 Feb 1;134(4):2028-31. PMID: 22239459
• Kim H, Kim A, and Cunningham KW. 2012. V-ATPase promotes vacuolar membrane permeabilization and non-apoptotic death in stressed yeast. J Biol Chem. 2012 Apr 16. [Epub ahead of print] PMID: 22511765
• Tong Z, Balzer EM, Dallas MR, Hung WC, Stebe KJ, Konstantopoulos K. 2012. Chemotaxis of cell populations through confined spaces at single-cell resolution. PLoS One. 2012;7(1):e29211. Epub 2012 Jan 18. PMID: 22279529
• Abaci HE, Devendra R, Smith Q, Gerecht S, and Drazer G. 2012. Design and development of microbioreactors for long-term cell culture in controlled oxygen microenvironments. Biomed Microdevices. 2012 Feb;14(1):145-52. PMID: 21947550
• Hielscher AC, Qiu C, and Gerecht S. 2012. Breast cancer cell-derived matrix supports vascular morphogenesis. Am J Physiol Cell Physiol. 2012 Apr;302(8):C1243-56. Epub 2012 Jan 25. PMID: 22277754
• Dickinson LE, Rand DR, Tsao J, Eberle W, and Gerecht S. 2012. Endothelial cell responses to micropillar substrates of varying dimensions and stiffness. J Biomed Mater Res A. 2012 Jun;100(6):1457-66. doi: 10.1002/jbm.a.34059. Epub 2012 Mar 3.
PMID: 22389314
• Khatau SB, Kusuma S, Hanjaya-Putra D, Mali P, Cheng L, Lee JS, Gerecht S, Wirtz D. 2012. The Differential Formation of the LINC-Mediated Perinuclear Actin Cap in Pluripotent and Somatic Cells. PLoS One. 2012;7(5):e36689. Epub 2012 May 4.
• Huynh KA, J. Michael McCaffery, and Kai Loon Chen. 2012. Heteroaggregation of Multiwalled Carbon Nanotubes and Hematite Nanoparticles: Rates and Mechanisms. Environ Sci Technol. 2012 Apr 30.
PMID: 22545989

2011

• Brian D. Wall, Stephen R. Diegelmann, Shuming Zhang, Thomas J. Dawidczyk, William L. Wilson, Howard E. Katz, Hai-Quan Mao and John D. Tovar. 2011. Aligned Macroscopic Domains of Optoelectronic Nanostructures Prepared via Shear-Flow Assembly of Peptide Hydrogels. Advanced Materials (in Press 2011).
• Dawnielle Farrar, Kailiang Ren, Derek Cheng, Sungjoo Kim, Wonkyu Moon, William L. Wilson, J. E. West, and M. S. Yu. 2011. Permanent Polarity and Piezoelectricity of Electrospun α-Helical Poly(α-Amino Acid) Fibers.
• Bruns, Caroline, J, Michael McCaffery, Amy J. Curwin, Juan M. Duran, and Vivek Malhotra. 2011. Biogenesis of a novel compartment for autophagosome-mediated unconventional protein secretion. J. Cell Biology. in press.
• Desai PJ, Pryce EN, Henson BW, Luitweiler E, Cothran J. 2011. Reconstitution of the Kaposi’s sarcoma-associated herpesvirus nuclear egress complex and formation of nuclear membrane vesicles by co-expression of ORF67 and ORF69 gene products. J Virol. 2011 Oct 19. [Epub ahead of print]
• Kim HS, Huang E, Desai J, Sole M, Pryce EN, Okoye ME, Person S, and Desai PJ. 2011. A domain in the HSV-1 triplex protein VP23 is essential for closure of capsid shells into icosahedral structures.J Virol. 2011 Sep 28. [Epub ahead of print]
• McKnight JN, Jenkins KR, Nodelman IM, Escobar T, and Bowman GD. 2011. Extranucleosomal DNA Binding Directs Nucleosome Sliding By Chd1. Mol Cell Biol. 2011 Oct 3. [Epub ahead of print]
• Chen YB, Aon MA, Hsu YT, Soane L, Teng X, McCaffery JM, Cheng WC, Qi B, Li H, Alavian KN, Dayhoff-Brannigan M, Zou S, Pineda FJ, O’Rourke B, Ko YH, Pedersen PL, Kaczmarek LK, Jonas EA, and Hardwick JM. 2011. Bcl-xL regulates mitochondrial energetics by stabilizing the inner membrane potential.J Cell Biol. 2011 Oct 17;195(2):263-76. Epub 2011 Oct 10.
• Randall CL, Kalinin YV, Jamal M, Shah A, and Gracias DH. 2011. Self-folding immunoprotective cell encapsulation devices. Nanomedicine. 2011 Sep 21. [Epub ahead of print]
• Seedorff J, and Schleif R. 2011. Active Role of the Interdomain Linker of AraC. J Bacteriol. 2011 Oct;193(20):5737-46. Epub 2011 Aug 12.
• Casper AL, Baxter K, and Van Doren M. 2011. no child left behind encodes a novel chromatin factor required for germline stem cell maintenance in males but not females.Development. 2011 Aug;138(16):3357-66. Epub 2011 Jul 13.
• Dostál L, Shao S, and Schildbach JF. 2011. Tracking F plasmid TraI relaxase processing reactions provides insight into F plasmid transfer. Nucleic Acids Res. 2011 Apr;39(7):2658-70. Epub 2010 Nov 24.
• Schrier SB, Sayeg MK, and Gray JJ. 2011. Prediction of calcite morphology from computational and experimental studies of mutations of a de novo-designed peptide. Langmuir. 2011 Sep 20;27(18):11520-7. Epub 2011 Aug 22.
• Griffin EE, Odde DJ, and Seydoux G. 2011. Regulation of the MEX-5 gradient by a spatially segregated kinase/phosphatase cycle. Cell. 2011 Sep 16;146(6):955-68.
• Fernandes R, Zuniga M, Sassine FR, Karakoy M, and Gracias DH. 2011. Enabling cargo-carrying bacteria via surface attachment and triggered release. Small. 2011 Mar 7;7(5):588-92. doi: 10.1002/smll.201002036. Epub 2011 Feb 2.
• Shen B, Fang Y, Wu N, and Gould SJ. 2011. BIOGENESIS OF THE POSTERIOR POLE IS MEDIATED BY THE EXOSOME/MICROVESICLE PROTEIN-SORTING PATHWAY. J Biol Chem. 2011 Aug 24. [Epub ahead of print]
• Guan L, van der Heijden GW, Bortvin A, and Greenberg MM. 2011. Intracellular detection of cytosine incorporation in genomic DNA by using 5-ethynyl-2′-deoxycytidine. Chembiochem. 2011 Sep 19;12(14):2184-90. doi: 10.1002/cbic.201100353. Epub 2011 Aug 1.
• Gan X, and Gould SJ. 2011. Identification of an inhibitory budding signal that blocks the release of HIV particles and exosome/microvesicle proteins. Mol Biol Cell. 2011 Mar 15;22(6):817-30. Epub 2011 Jan 19.
• Park J, Dvoracek C, Lee KH, Galloway JF, Bhang HE, Pomper MG, and Searson PC. 2011. CuInSe/ZnS Core/Shell NIR Quantum Dots for Biomedical Imaging. Small. 2011 Sep 21. doi: 10.1002/smll.201101558. [Epub ahead of print]
• Wells RC, and Hill RB. 2011. The cytosolic domain of Fis1 binds and reversibly clusters lipid vesicles. PLoS One. 2011;6(6):e21384. Epub 2011 Jun 28.
• Nakanishi M, Patil R, Ren Y, Shyam R, Wong P, Mao HQ. 2011. Enhanced stability and knockdown efficiency of poly(ethylene glycol)-b-polyphosphoramidate/siRNA micellar nanoparticles by co-condensation with sodium triphosphate.Pharm Res. 2011 Jul;28(7):1723-32. Epub 2011 Mar 9.
• Jiang X, Leong D, Ren Y, Li Z, Torbenson MS, and Mao HQ. 2011. String-like micellar nanoparticles formed by complexation of PEG-b-PPA and plasmid DNA and their transfection efficiency. Pharm Res. 2011 Jun;28(6):1317-27. Epub 2011 Apr 16.
• Wang Z, Che PL, Du J, Ha B, and Yarema KJ. 2011. Static magnetic field exposure reproduces cellular effects of the Parkinson’s disease drug candidate ZM241385. PLoS One. 2010 Nov 8;5(11):e13883.
• Farrar D, Ren K, Cheng D, Kim S, Moon W, Wilson WL, West JE, and Yu SM. 2011. Permanent polarity and piezoelectricity of electrospun α-helical poly(α-amino acid) fibers. Adv Mater. 2011 Sep 8;23(34):3954-8. doi: 10.1002/adma.201101733. Epub 2011 Jul 28.
• Wang P, Zhu F, Tong Z, and Konstantopoulos K. 2011. Response of chondrocytes to shear stress: antagonistic effects of the binding partners Toll-like receptor 4 and caveolin-1. FASEB J. 2011 Oct;25(10):3401-15. Epub 2011 Jun 29.
• Zhang Y, Park S, Liu K, Tsuan J, Yang S, and Wang TH. 2011.. A surface topography assisted droplet manipulation platform for biomarker detection and pathogen identification. Lab Chip. 2011 Feb 7;11(3):398-406. Epub 2010 Nov 3.
• Patil RR, Yu J, Banerjee SR, Ren Y, Leong D, Jiang X, Pomper M, Tsui B, Kraitchman DL,and Mao HQ. 2011. Probing in vivo trafficking of polymer/DNA micellar nanoparticles using SPECT/CT imaging.Mol Ther. 2011 Sep;19(9):1626-35. doi: 10.1038/mt.2011.128. Epub 2011 Jul 12.
• Bodmer D, M. Ascaño, and R. Kuruvilla. 2011. Isoform-specific dephosphorylation of dynamin1 by calcineurin couples neurotrophin receptor endocytosis to axonal growth. Neuron.Jun 23;70(6):1085-99.
• K. McDole, Xiong, Y., Iglesias, PA, and Zheng, Y. 2011. Lineage mapping the pre-implantation mouse embryo by two-photon microscopy, new insights into the segregation of cell fates. Developmental Biology.in press.
• Weyers JJ, AB Milutinovich, Y Takeda, JC Jernc, and M Van Doren. 2011. A genetic screen for mutations affecting gonad formation in Drosophila reveals a role for the slit/robo pathway. Developmental Biology. 353(2): 217-228.
• Coburn J, M Gibson, PA Bandalini, C Laird, HQ Mao, L Moroni, D Seliktar, and J Elisseeff. 2011. Biomimetics of the extracellular matrix: an integrated three-dimensional fiber-hydrogel composite for cartilage tissue engineering. Smart Structures and Systems. 7(3): 213-222.
• Mahairaki V, SH Lim, GT Christopherson, X Leyan, I Nasonkin, C Yu, HQ Mao, and V Koliatsos. 2011. Nanofiber Matrices Promote the Neuronal
Differentiation of Human Embryonic Stem Cell-Derived Neural Precursors In Vitro. Tissue Engineering: Part A. 17(5): 855-863
•Jiang, Xuan, D. Leong, Yong Ren, ZP Li, MS Torbenson, and Hai-Quan Mao. 2011. String-Like Micellar Nanoparticles Formed by Complexation of PEG-b-PPA and Plasmid DNA and Their Transfection Efficiency. Pharmaceutical Research. 28(6):1317-1327.
• Hu, GL, KT Ramesh, BY Cao, and JW McCauley. 2011. The compressive failure of aluminum nitride considered as a model advanced ceramic. J. Mechanics and Physics of Solids 59(5): 1076-1093.
• Hwang NS, Varghese S, Li H,and Elisseeff J. 2011. Regulation of osteogenic and chondrogenic differentiation of mesenchymal stem cells in PEG-ECM hydrogels. Cell Tissue Res. 2011 Apr 19. [Epub ahead of print] PMID: 21503601
• Dostál L, Shao S, Schildbach JF. 2011. Tracking F plasmid TraI relaxase processing reactions provides insight into F plasmid transfer. Nucleic Acids Res. 2011 Apr 1;39(7):2658-70. Epub 2010 Nov 24.
PMID: 21109533
• McNeill DS, Sheely CJ, Ecker JL, Badea TC, Morhardt D, Guido W, and Hattar S. 2011. Development of melanopsin-based irradiance detecting circuitry. Neural Dev. 2011 Mar 18;6:8.
PMID: 21418557
• Abaci HE, Truitt R, Tan S, and Gerecht S. 2011. Unforeseen decreases in dissolved oxygen levels affect tube formation kinetics in collagen gels. Am J Physiol Cell Physiol. 2011 May 4. [Epub ahead of print] PMID: 21543738
• Hanjaya-Putra D, Bose V, Shen YI, Yee J, Khetan S, Fox-Talbot K, Steenbergen C, Burdick JA, and Gerecht S. 2011. Controlled activation of morphogenesis to generate a functional human microvasculature in a synthetic matrix. Blood. 2011 Apr 28. [Epub ahead of print]
• Yee D, Hanjaya-Putra D, Bose V, Luong E, and Gerecht S. 2011. Hyaluronic Acid hydrogels support cord-like structures from endothelial colony-forming cells.T issue Eng Part A. 2011 May;17(9-10):1351-61. Epub 2011 Mar 3.
• Jin Zhang , Ivan Khvorostov , Jason Hong , Yavuz Oktay , Laurent Vergnes , Anna Do , Hea-Jin Jung , J. Michael McCaffery , Karen Reue , Carla Koehler, and Michael Teitell. 2010. Energy metabolism in human pluripotent stem cells. PNAS. Submitted.
• Mickael M. Cohen, Elizabeth A. Amiott, Adam R. Day, Guillaume P. Leboucher, Michael H. Glickman, J. Michael McCaffery, Janet M. Shaw, and Allan M. Weissman. 2010. Sequential requirements for the GTPase domain of the mitofusin Fzo1 and the ubiquitin ligase SCFMdm30 in mitochondrial outer membrane fusion. J Cell Sci. 2011 May 1;124(Pt 9):1403-10.
• Reider A, and Wendland B. 2011. Endocytic adaptors – social networking at the plasma membrane. J Cell Sci. 2011 May 15;124(Pt 10):1613-22. PMID: 21536832
• Micah T. Webster, J. Michael McCaffery, and Orna Cohen-Fix. 2011. Vesicle Trafficking is Required to Maintain Nuclear Morphology in S. cerevisiae. J Cell Biol. 2010 Dec 13;191(6):1079-1088. Epub 2010 Dec 6. PMID: 21135138
• Tan FJ, Zuckerman JE, Wells RC, and Hill RB. 2011. The C. elegans B-cell lymphoma 2 (Bcl-2) homolog cell death abnormal 9 (CED-9) associates with and remodels LIPID membranes. Protein Sci. 2011 Jan;20(1):62-74.
• . David Ramonet , Joao Daher , Brian Lin , Klodjan Stafa , Jaekwang Kim , Rebecca Banerjee , Marie Westerlund , Olga Pletnikova , Liliane Glauser , Lichuan Yang , Ying Liu , Deborah Swing , M. Beal , Juan Troncoso , J.M. McCaffery , Nancy Jenkins, Neal Copeland, Dagmar Galter , Bobby Thomas , Michael Lee , Ted Dawson , Valina Dawson, and Darren Moore. 2011. Dopaminergic Neuronal Loss, Reduced Neurite Complexity and Autophagic Abnormalities in Transgenic Mice Expressing G2019S Mutant LRRK2. PLoS1. PLoS One. 2011 Apr 6;6(4):e18568.

2010

• Hauk, G., McKnight J., Nodelman, I.M., Bowman, G.D. 2010. The Chromodomains of theChd1 Chromatin Remodeler Regulate DNA Access to the ATPase Motor. Molecular Cell. 39(5):711-23.
• Prosser DC, Whitworth K, and Wendland B. 2011. Quantitative analysis of endocytosis with cytoplasmic pHluorin chimeras. Traffic. 2010 Sep;11(9):1141-50. Epub 2010 Jun 15.
PMID: 20626707
• Withers, J.B. and Beemon, K.L. 2010. Structural elements in the Rous sarcoma virus RNA stability elementare necessary for sensing the correct termination codon. Retrovirology. 7:65-80.
• Prosser, D., Tran, D., Schooley, A., Wendland, B., and Ngsee, J.K. 2010. A novel, retromer-independent role for Sorting Nexins 1 and 2 in RhoG-dependent membrane remodeling. Traffic. 11:1347-1362.
• David Ramonet , Joao Daher , Brian Lin , Klodjan Stafa , Jaekwang Kim , Rebecca Banerjee , Marie Westerlund , Olga Pletnikova , Liliane Glauser , Lichuan Yang , Ying Liu , Deborah Swing , M. Beal , Juan Troncoso , J.M. McCaffery , Nancy Jenkins, Neal Copeland, Dagmar Galter , Bobby Thomas , Michael Lee , Ted Dawson , Valina Dawson, and Darren Moore. 2010. Dopaminergic Neuronal Loss, Reduced Neurite Complexity and Autophagic Abnormalities in Transgenic Mice Expressing G2019S Mutant LRRK2. PNAS. Submitted.
• Xuewen Pan, Stefanie Reissman, Nick R. Douglas, Zhiwei Huang, Daniel S. Yuan*, Xiaoling Wang, J. Michael McCaffery, Judith Frydman, and Jef D. Boeke. 2010. Trivalent arsenic inhibits the functions of chaperonin complex. Genetics. In press.
• Geng Wang, Hsiao-Wen Chen, Yavuz Oktay, Jin Zhang, Eric L. Allen, Geoffrey M. Smith, Kelly C. Fan, Jason S. Hong, Samuel W. French, J. Michael McCaffery, Robert N. Lightowlers,7 Herbert C. Morse III, Carla M. Koehler, and Michael A. Teitell. 2010. PNPASE Regulates RNA Import into Mitochondria. Cell 142:1-12.
• Daniels BR, Dobrowsky TM, Perkins EM, Sun SX, and Wirtz D. 2010. MEX-5 enrichment in the C. elegans early embryo mediated by differential diffusion. Development 137(15):2579-85.
• Jiang X, Zheng Y, Chen HH, Leong KW, Wang TH,and Mao HQ. 2010. Dual-Sensitive Micellar Nanoparticles Regulate DNA Unpacking and Enhance Gene-Delivery Efficiency. Adv. Mater. 22(23):2556-2560.
• Bailey VJ, Keeley BP, Razavi CR, Griffiths E, Carraway HE, and Wang TH. 2010. DNA methylation detection using MS-qFRET, a quantum dot-based nanoassay. Methods. E-pub April 1.
• Tyedmers J, S Treusch, J Dong, J.M. McCaffery, B Bevis, and S Lindquist. 2010. Prion Induction Involves an Ancient for the Sequestration of Aggregated Proteins and Heritable Changes in Prion Fragments. Proc. Natl. Acad Sciences USA. 107(19):8633-8.
• Chen, H, M Vermulst, YE Wang, A Chomyn, JM McCaffery, and DC Chan. 2010. Mitochonrial fusion is required for mtDNA stability and tolerance of mtDNA mutations. Cell. 141(2):280-289.
• Lai SK, Wang YY, Hida K, Cone R, and Hanes J. 2010. Nanoparticles reveal that human cervicovaginal mucus is riddled with pores larger than viruses. Proc. Nat. Acad. Sci. 107(2):598-603.
• Jamal M, Bassik N, Cho JH, Randall CL, Gracias DH. 2010. Directed growth of fibroblasts into three dimensional micropatterned geometries via self-assembling scaffolds. Biomaterials. 2010 Mar;31(7):1683-90.
• Esue O, Rupprecht L, Sun SX, and Wirtz D. 2010. Dynamics of the bacterial intermediate filament crescentin in vitro and in vivo. PLoS One. 2010 Jan 25;5(1):e8855.
•Komatsu, T, I Kukelyansky, JM McCaffery, T Ueno, LC Varela, and T Inoue. 2010. Organelle-specific, rapid induction of molecular activities and membrane tethering. Nat. Methods. (3):206-208.
• McIntosh Ambrose W, Schein O,and Elisseeff J. 2010. A tale of two tissues: stem cells in cartilage and corneal tissue engineering. Curr Stem Cell Res Ther. 2010 Mar;5(1):37-48.
•Allen SA, W Clark, JM McCaffery, Z Cai, A Lanctot, PJ Slininger, ZL Liu, and SW Gorsich. 2010. Furfural induces reactive oxygen species accumulation and cellular damage in Saccharomyces cerevisiae. Biotechnol. Biofuels. 15; 3:2.
• Su LJ, PK Auluck, TF, Outeiro, E Yeger-Lotem, JA Kritzer, DF Tardiff, KE Strathearn, F Liu, S Cao, S Hamamichi, KJ Hill, KA Caldwell, GW Bell, E Frankel, AA, Cooper, GA Caldwell, JM McCaffery, JC Rochet, and S. Lindquist. 2010. Compounds from an unbiased chemical screen reverse both ER-to-Golgi trafficking defects and mitochondrial dysfunction in Parkinson’s disease models. Dis. Model Mech. 3:(3-4):194-208.

2009

• Boettner DR, D’Agostino JL, Torres OT, Daugherty-Clarke K, Uygur A, Reider A, Wendland B, Lemmon SK, and Goode BL. 2009. The F-BAR protein Syp1 negatively regulates WASp-Arp2/3 complex activity during endocytic patch formation. Curr. Biol. 19(23):1979-87.
• Bolisetty MT, Dy G, Tam W, and Beemon KL. 2009. Reticuloendotheliosis virus strain T induces miR-155, which targets JARID2 and promotes cell survival. J Virol. 2009 Dec;83(23):12009-17.
• Hanjaya-Putra D, Yee J, Ceci D, Truitt R, Yee D, and Gerecht S. 2009. Vascular endothelial growth factor and substrate mechanics regulate in vitro tubulogenesis of endothelial progenitor cells. J Cell Mol Med. 2009 Nov 28. [Epub ahead of print].
• Dores MR, Schnell JD, Maldonado-Baez L, Wendland B, and Hicke L. 2009. The function of yeast epsin and Ede1 ubiquitin-binding domains during receptor internalization. Traffic. 11(1):151-60.
• Khatau SB, Hale CM, Stewart-Hutchinson PJ, Patel MS, Stewart CL, Searson PC, Hodzic D, and Wirtz D. 2009. A perinuclear actin cap regulates nuclear shape. Proc. Nat. Acad. Sci. 106(45):19017-22.
• Narayan, K, EM Perkins, GE Murphy, SK Dala, M Edidin, S Subramaniam, and s Sadegh-Nasseri. 2009. Staphylococcal enterotoxin A induces small clusters of HLA-DR1 on B cells. PLoS One. 4(7): e6188.
• Picton LK, Casares S, Monahan AC, Majumdar A, and Hill RB. 2009. Evidence for conformational heterogeneity of fission protein Fis1 from Saccharomyces cerevisiae. Biochemistry. 2009 Jul 21;48(28):6598-609.
• Darnell, L.A., Teaford, M.F., Livi, K.J.T., and Wiehs, T.P. (2009) Variations in the mechanical properties of Alouatta Palliata molar enamel. In press. American Journal of Physical Anthropology.
• Livi, K.J.T., Senesi G., Scheinost, A., and Sparks, D.L. (2009) Electron microscopy examination of mixed Ni-Al hydroxide precipitates on pyrophyllite. Environmental Science and Technology, 43, 1299-1304.
• Christidis, G.E., Mantsoglu, E., Livi, K.J.T., Árkai, P., and Hórvath, P. 2009. Na-rich micas in the anchizonal Ravdoucha Beds, Western Crete, Greece. Submitted to European Journal of Mineralogy.
• Livi, K.J.T., Geyh, A., Kyle, J., Richman, J., Schroeder, P., Sparks, D., and Tappero R. (2009) Electron microscopy of nanoparticles in the environment and health. IFCAM Workshop on Frontier of Advanced Materials, Book Chapter in Advances in Materials Science, Springer, in press.
• Casper AL, and Van Doren M. 2009. The establishment of sexual identity in the Drosophila germline. Development. 136(22): 3821-3830.
• J. F. Galloway, J. Park, H. H. Lee, D. Wirtz, and P. C. Searson, “Exploiting nucleation and growth in the synthesis and electrical passivation of CdSe quantum dots,” Science of Advanced Materials 1, 93-100 (2009). DOI: 10.1166/sam.2009.1014
• L. Guo, S. Zhang, and P. C. Searson, “Growth kinetics of disk-shaped copper islands in electrochemical deposition,” Phys. Rev. E 79, 051601 (2009). DOI: 10.1103/PhysRevE.79.051601
• Laran T. Jensen, Mark C. Carroll, Matthew D. Hall, Christopher J. Harvey, Sara E. Beese, and Valeria C. Culotta. 2009. Down-Regulation of a Manganese Transporter in the Face of Metal Toxicity.Mol. Biol. Cell. 20(12): 2810-2819.
• Frederick J. Tan, Michelle Husain, Cara Marie Manlandro, Marijke Koppenol, Andrew Z. Fire, and R. Blake Hill. 2009. CED-9 and mitochondrial homeostasis in C. elegans muscle. J. Cell Science. 121(Pt20): 3373-3382.
• S.P. Joshi, C. Eberl, B. Cao, K.T. Ramesh & K.J. Hemker, “On the Occurrence of Portevin – Le Châtelier Instabilities in Ultrafine-Grained 5083 Aluminum Alloys,” Experimental Mechanics, Vol. 49, No. 2, pp. 207-218, 2009.
• Q. Wei, K. T. Ramesh, L.J. Kecskes, S. N. Mathaudhu, and K. T. Hartwig, “Ultrafine and nanostructured refractory metals processed by SPD: microstructure and mechanical properties,” Materials Science Forum, in press.
• Sung, Y.S., Joshi, S.P., & K.T. Ramesh, “An Enhanced Continuum Model for Size-Dependent Strengthening and Failure of Particle Reinforced Composites,” Acta materialia, 2009.
• B. Li, S. Joshi, K. Azevedo, E. Ma, K. T. Ramesh, R.B. Figueiredo, and T.G. Langdon, “Dynamic Testing at High Strain Rates of an Ultrafine-Grained Magnesium Alloy Processed by ECAP,” Materials Science and Engineering A, Vol. 517, Issue: 1-2 , Pages: 24-29, 2009.
• B. Cao, S.P. Joshi, and K.T. Ramesh, “Strengthening Mechanisms in Cryomilled Ultra-Fine-Grained Aluminum Alloy at Quasistatic and Dynamic Rates of Loading, Scripta Materialia,” 2009, 60, 619-622.
•E.L. Huskins, B. Cao, K.T. Ramesh, (2009) “Strengthening Mechanisms in an Al-Mg Alloy”, submitted to Materials Science and Engineering A.
• Liu Z, and Y. Zheng. 2009. A requirement for epsin in mitotic membrane and spindle organization. J. Cell Biol.. 186(4): 473-480.
• Ascaño M, Richmond A, Borden P, and Kuruvilla R. 2009. Axonal targeting of Trk receptors via transcytosis regulates sensitivity to neurotrophin responses. J. Neurosciencees. 29(37): 11674-11685.
• Kritzer JA, Hamamichi S, McCaffery JM, Santagata S, Naumann TA, Caldwell KA, Caldwell GA, and Lindquist S. 2009. Rapid selection of cyclic peptides that reduce alpha-synuclein toxicity in yeast and animal models. Nat. Chem. Biol. 5(9): 655-663.
• Smith, B.; Wepasnick, K.; Schrote, K. E.; Bertele, A. R.; Ball, W. P.; O’Melia, C.; Fairbrother, D. H., Colloidal Properties of Aqueous Suspensions of Acid-Treated, Multi-Walled Carbon Nanotubes. Environ. Sci. Technol. 2009, 43, (3), 819-825.
• Smith, B.; Wepasnick, K.; Schrote, K. E.; Cho, H.-H.; Ball, W. P.; Fairbrother, D. H., Influence of Surface Oxides on the Colloidal Stability of Multi-walled Carbon Nanotubes: A Structure-Property Relationship Langmuir 2009, 25, (17), 9767-9776.
• Burston HE, Maldonado-Báez L, Davey M, Montpetit B, Schluter C, Wendland B, Conibear E. 2009. Regulators of yeast endocytosis identified by systematic quantitative analysis. J. Cell Biol 185(6): 1097-1110.
• Henson BW, Perkins EM, Cothran JE, Desai P. 2009. Self-assembly of Epstein-Barr virus capsids. J. Virol. 83(8): 3877-3890.
• Reider A, Barker SL, Mishra SK, Im YJ, Maldonado-Báez L, Hurley JH, Traub LM, and Wendland B. 2009. Syp1 is a conserved endocytic adaptor that contains domains involved in cargo selection and membrane tubulation. EMBO J. 28(20): 3103-3116.
• Johnson, BS, D Snead, JJ Lee, JM McCaffery, J Shorter, and AD Gilter. 2009. TDP-43 is intrinsically aggregation-prone, and amyotrophic lateral sclerosis-linked mutations accelerate aggregation and increase toxicity. J. Biol. Chem. 284(30): 20329-20339.
• Mukherjee D, Coon BG, Edwards DF 3rd, Hanna CB, Longhi SA, McCaffery JM, Wendland B, Retegui LA, Bi E, and Aguilar RC. 2009. The yeast endocytic protein Epsin 2 functions in a cell-division signaling pathway. J. Cell Science. 122(pt 14): 2453-2463.
• Song Z, Ghochani M, McCaffery JM, Frey TG, and Chan DC. 2009. Mitofusins and OPA1 mediate sequential steps in mitochondrial membrane fusion. Mol. Biol. Cell. 20 (15): 3525-3532.
• Ganhui L, L, BR Daniels, TM, Dobrowsky, D. Wirtz, and SX Sun. 2009. Condensation of FtsZ filaments can drive bacterial cell division. Proc Natl Acad Sci USA 106(1):121-126.
• Berman SB, Chen YB, Qi B, McCaffery JM, Rucker EB 3rd, Goebbels S, Nave KA, Arnold BA, Jonas EA, Pineda FJ, and Hardwick JM. 2009. Bcl-x L increases mitochondrial fission, fusion, and biomass in neurons. J. Cell Biol. 184(5): 707-719.
• Fooksman DR, SR Shaikh, S. Boyle, and M. Edidin. 2009. Cutting edge: phosphatidylinositol 4,5-bisphosphate concentration at the APC side of the immunological synapse is required for effector T cell function. J. Immunol. 182(9): 5179-5182.
• Abe, F, N Van Prooyen, JJ Ladasky, and M Edidin, 2009. Interaction of Bap31 and MHC class I molecules and their traffic out of the endoplasmic reticulum. J. Immunol. 182(8): 4776-4763.
• Lai, SK, Ying-Ying Wang, R. Cone, D. Wirtz, and J. Hanes. 2009. Altering Mucus Rheology to “Solidify” Human Mucus at the Nanoscale. PLoS One. 4(1):e4294
• Daniels, B.R., E.M. Perkins, T.M. Dobrowsky, S.X. Sun, and D. Wirtz. 2009 Asymmetrical enrichment of PIE-1 in the Caenorhabditis elegans zygote mediated by binary counterdiffusion. J. Cell Biol. 184(4):473-479.
• Hoppins, S., J. Horner, C. Song, J.M. McCaffery, and J. Nunnari. 2009. Mitochondrial outer and inner membrane fusion requires a modified carrier protein. J. Cell Biol. in press.
• Suk JS, Lai SK, Wang YY, Ensign LM, Zeitlin PL, Boyle MP, and Hanes J. 2009. The penetration of fresh undiluted sputum expectorated by cystic fibrosis patients by non-adhesive polymer nanoparticles. Biomaterials Jan 26 E-pub.
• Christopherson GT, Song H, and Mao HQ. 2009. The influence of fiber diameter of electrospun substrates on neural stem cell differentiation and proliferation. Biomaterials. 30(4):556-564

2008

• Weil JE, Hadjithomas M, and Beemon KL. 2009. Structural characterization of the Rous sarcoma virus RNA stability element. J. Virol. 83:2119-2129.
• Hwang NS, Varghese S, Lee HJ, Zhang Z, Ye Z, Bae J, Cheng L, and Elisseeff J.2008. In vivo commitment and functional tissue regeneration using human embryonic stem cell-derived mesenchymal cells.. Proc. Nat. Acad. Sciences. 105(52):20641-46.
• Anderson BJ, Larkin C, Guja K, AND Schildbach JF. 2008. Using fluorophore-labeled oligonucleotides to measure affinities of protein-DNA interactions. Methods in Enzymol. 450:253-272.
• Drecktrah D, Levine-Wilkinson S, Dam T, Winfree S, Knodler LA, Schroer TA, and Steele-Mortimer O. 2008. Dynamic Behavior of Salmonella-Induced Membrane Tubules in Epithelial Cells. Traffic. (9):2117-2129.
• Burgess NK, Dao TP, Stanley AM, and Fleming KG. 2008. Beta-barrel proteins that reside in the Escherichia coli outer membrane in vivo demonstrate varied folding behavior in vitro. J Biol Chem. 2008 Sep 26;283(39):26748-58. Epub 2008 Jul 19.
• Lee HJ, Yu C, Chansakul T, Hwang NS, Varghese S, Yu SM, and Elisseeff JH. 2008. Enhanced chondrogenesis of mesenchymal stem cells in collagen mimetic peptide-mediated microenvironment. Tissue Eng Part A. 2008 Nov;14(11):1843-51.
• Yang F, Xian RR, Li Y, Polony TS,and Beemon KL. 2008. Telomerase reverse transcriptase expression elevated by avian leukosis virus integration in B cell lymphomas. Proc. Nat. Acad, Sciences. 104 (48):18952-7.
• Hekman K, Guja K, Larkin C, and Schildbach JF.2008. An intrastrand three-DNA-base interaction is a key specificity determinant of F transfer initiation and of F TraI relaxase DNA recognition and cleavage. Nucleic Acid Research. 36(14):4565-72.
• Maier KC, Godfrey JE, Echeverri CJ, Cheong FK, and Schroer TA. 2008. Dynamitin mutagenesis reveals protein-protein interactions important for dynactin structure. Traffic. 9(4):481-491.
• Kurishchko, C., V. K. Kuravi, N. Wannissom, P.A. Nazarov, M. Husain, C. Zhang, K.M. Shokat, J.M. McCaffery, and F.C. Luca. 2008. The yeast LATS/Ndr kinase Cbk1 regulates growth via Golgi-dependent glycosylation and secretion. Mol. Biol. Cell in press.
• Claypool, S.M., P. Boontheung, J.M. McCaffery, J.A. Loo, and C.M. Koehler. 2008. The cardiolipin transacylase, tafazzin, associates with two distinct respiratory components providing insight into Barth Syndrome. Mol. Biol. Cell. E-published ahead of print 09/17/2008.
• Dalo, D.T., J.M. McCaffery, and J.P. Evans. 2008. Membrane function abnormalities in fertilized post-ovulatory aged eggs seen bylow-vacuum scanning electron microscopy. Int J Dev Biol. 52(5-6):535-44.
• Song Y, K.D. Cygnar, B. Sagdullaev, M. Valley, S. Hirsh, A. Stephan, J. Reisert and, H. Zhao. 2008. Olfactory CNG channel desensitization by Ca2+/CaM via the B1b subunit affects response termination but not sensitivity to recurring stimulation. Neuron. 58(3):374-86.
• Perkins, E.M., D. Anacker, A. Davis, V. Sankar, R.F. Ambinder, and P. Desai. 2008. Assembly of Kaposi’s sarcoma-associated herpesvirus (KSHV) capsids in insect cells using recombinant baculoviruses: the small capsid protein is essential for assembly. J. Virol E. Pub May 7, 2008.
• Maldonado-Baez, L., M.R. Dores, E.M. Perkins, T.G. Drivas, L. Hicke, and B. Wendland. 2008. Interaction between Epsin/Yap180 Adaptors and the Scaffolds Ede1/Pan1 Is Required for Endocytosis. Mol. Biol. Cell. E-Pub. April 30, 2008.
• Maier, KC, JE Godfrey, CJ Echeverri, FKY Cheong, TA Schroer. 2008. Dynamitin mutagenesis reveals protein-protein interactions important for dynactin structure. Traffic. 9(4): 481-491.
• Kroon E., L.A. Martinson, K. Kadoya, A.G. Bang, O.G. Kelly, S. Eliazer S., H. Young, M. Richardson, N.G. Smart, J. Cunningham, A.D. Aquinick, K.A. D’Amour, M.K. Carpenter, and E.E. Baetge. 2008. Pancreatic endoderm derived from human embryonic stem cells generates glucose-responsive insulin-secreting cells in vivo. Nat. Biotechnology. 26(4): 443-452.
• Hwang NS, Varghese S, and Elisseeff J. 2008. Derivation of chondrogenically-committed cells from human embryonic cells for cartilage tissue regeneration. PLoS ONE. 2008 Jun 25;3(6):e2498.
• Booker-Dwyer, T., S. Hirsh, and H. Zhao. 2008. A unique cell population in the mouse olfactory bulb displays nuclear b-catenin signaling during development and olfactor sensory neuron regeneration. Dev. Neurobiology. 68(7): 859-869.
• Johnsson, B.S., J.M. McCaffery, S. Lindquist, and A.D. Gitler. 2008. A yeast TDP-43 proteinopathy model: Exploring the molecular determinants of TDP-43 aggregation and cellular toxicity. PNAS. 105(17): 6439-6444.
• Kai, S.K., and J. Hanes. 2008. Real-time multiple particle tracking of gene nanocarriers in complex biological environments. Methods Mol. Biol. 434:81-97.
• Amiott, E.A., P.Lott, J. Soto, P. B. Kang, J M. McCaffery, S. DiMauro, E. D. Abel, K. M. Flanigan, V.H. Lawson, and J.M. Shaw. 2008. Mitochondrial Fusion and Function in Charcot-Marie-Tooth Type 2A Fibroblasts with Mitofusin 2 Mutations. J. Exp. Neurology. 211(1): 115-127.
• Kroon E, Martinson LA, Kadoya K, Bang AG, Kelly OG, Eliazer S, Young H, Richardson M, Smart NG, Cunningham J, Agulnick AD, D’Amour KA, Carpenter MK, Baetge EE. 2008. Pancreatic endoderm derived from human embryonic stem cells generates glucose-responsive insulin-secreting cells in vivo. Nat Biotechnol. 2008 Feb 20
• DeFalco T, Camara N, Le Bras S, and Van Doren M. 2008. Nonautonomous sex determination controls sexually dimorphic development of the Drosophila gonad. Dev Cell. 2008 Feb;14(2):275-86.
• Jin, H., J.M. McCaffery, and E. Grote. 2008. Ergosterol promotes pheromone signaling and plasma membrane fusion in mating yeast. J. Cell Biology.180(4):813-826.
• Rodgers ME, and Schleif R. 2008. DNA tape measurements of AraC. Nucleic Acid Research. 36(2);404-410.
• Gitler, A., B. J. Bevis, J.s Shorter1, K. E. Strathearn, S. Hamamichi, L.J. Su, K.A.. Caldwell, G. A. Caldwell, J-C. Rochet, J. M. McCaffery, C. Barlowe, and S. Lindquist. 2008. The Parkinson’s Disease Protein a-Synuclein Disrupts Cellular Rab Homeostasis. PNAS. PNAS. 105(1):145-50.
• Drecktrah, D, S Levine-Wilkinson. T Dam, S. Winfree, LA Knodler, TA Schroer, and O Steele-Mortimer. 2008. Dynamic Behavior of Salmonella-Induced Membrane Tubules in Epithelial Cells. Traffic. 9(12): 2117-2129.

2007

• Wells RC, L.K. Picton, S.C. Williams, F.J. Tan,and R.B. Hill. 2007.Direct Binding of the Dynamin-like GTPase, Dnm1, to Mitochondrial Dynamics Protein Fis1 Is Negatively Regulated by the Fis1 N-terminal Arm. J Biol Chem. 2007 Nov 16;282(46):33769-75
• Everett M.W., and M. Edidin. 2007. Tapasin increases efficiency of MHC I assembly in the endoplasmic reticulum but does not affect MHC I stability at the cell surface. J. Immunology. 179(11):7646-52.
• Hwang NS, Varghese S, Lee HJ, Theprungsirikul P, Canver A, Sharma B, and Elisseeff J.2007. Response of zonal chondrocytes to extracellular matrix-hydrogels.
FEBS Lett. 2007 Sep 4;581(22):4172-8. Epub 2007 Jul 31.
• Fang Y, N. Wu , X. Gan , W. Yan, J.C. Morrell , and S.J. Gould. 2007. Higher-order oligomerization targets plasma membrane proteins and HIV gag to exosomes.
PLoS Biol. 2007 Jun;5(6):e158.
• Johnson EA, Rosenberg J, McCarty RE. 2007. Expression by Chlamydomonas reinhardtii of a chloroplast ATP synthase with polyhistidine-tagged beta subunits.
Biochim Biophys Acta. 1767(5):374-80. Epub 2007 Mar 15.
• Yang F, R.R. Xian, Y. Li , T.S. Polony ,and K.L. Beemon KL. 2007. Telomerase reverse transcriptase expression elevated by avian leukosis virus integration in B cell lymphomas.
Proc Natl Acad Sci U S A. 2007 Nov 16; [Epub ahead of print]
• LeBlanc JJ, S. Uddowla , B. Abraham, S. Clatterbuck, and K.L. Beemon. 2007. Tap and Dbp5, but not Gag, are involved in DR-mediated nuclear export of unspliced Rous sarcoma virus RNA.
Virology. 2007 Jul 5;363(2):376-86.
• Chen, H., J.M McCaffery, and D.C. Chan. 2007. Mitochondrial Fusion protects Against Neurodegeneration in the Cerebellum. Cell. 130, 548–562.
• Huang E., E.M. Perkins, and P. Desai. 2007. Structural features of the scaffold interaction domain at the N terminus of the major capsid protein (VP5) of herpes simplex virus type 1.
J Virol. 81(17):9396-407.
• Varghese S, Hwang NS, Canver AC, Theprungsirikul P, Lin DW, Elisseeff J. 2007. Chondroitin sulfate based niches for chondrogenic differentiation of mesenchymal stem cells. Matrix Biol. Epub ahead of print. July 2007.
• Plomp, M, J.M. McCaffery, I. Cheong, X. Huang, C. Bettegowda, K.W. Kinzler, S. Zhou. B. Vogelstein, and A.J. Malkin. 2007. Spore Coat Architecture of Clostridium novyi-NT spores. J. Bacteriology. E-published ahead of print. June 22.
• Sole, M., E.M. Perkins, A. Frisancho, E. Huang, and P. Desai. 2007. The N-terminus of the HSV-1 triplex protein, VP19C cannot be detected on the surface of the capsid shell using an antibody (HA) tag. J. Virology J Virol. 81(15):8367-70.
• Hwang, N.S., S. Varghese, C Puleo, Z. Zhang, and J. Elisseeff. 2007. Morphogenetic signals from chondrocytes promote chondrogenic and osteogenic differentiation of mesenchymal stem cells.
J Cell Physiol. (2):281-4.
• Lai, S.K., K. Hida, S.T. Man, C. Chen, C. Machamer, T. Schroer, and J. Hanes. 2007. Privileged delivery of polymer nanoparticles to the perinuclear region of live cells via a non-clathrin, non-degradative pathway. Biomaterials. 2007 (18):2876-84.
• Barker, S.L., L lee, B.D. Pierce, L. Maldonado-Baez, D.G. Drubin, and B.W. Wendland. 2007. Interaction of the Endocytic Scaffld Protein Pan 1 with Type 1 Myosins Contributes to the Late Stages of Endocytosis. Mol Biol Cell. ePub May 23.
• Suk, JS, J. Suh, S.K. Lai, and J. Hanes. 2007. Quantifying the intracellular transport of viral and nonviral gene vectors in primary neurons. Experimental Biol. Med. 232(3):461-469.
• Perkins, E.M. and J.M. McCaffery. 2007. Conventional and Immunoelectron Microscopy of Mitochondria. Methods Mol. Biol. March 2007.
• Paliwal S, Iglesias PA, Campbell K, Hilioti Z, Groisman A,and Levchenko A. 2007. MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast.
Nature. 2007 Mar 1;446(7131):46-51. Epub 2007 Feb 18.
• Beaucher M, J. Goodliffe, E. Hersperger, S. Trunova, H. Frydman, and A. Shearn. 2007. Drosophila brain tumor metastases express both neuronal and glial cell type markers. Dev Biol. 301(1):287-97.
• Lai S.K., E. O’Hanlon, S. Harrold, S.T. Man, Y-Y Wang, R. Cone, and J. Hanes. 2007. Rapid transport of Large Polymeric Nanoparticles in Fresh Undiluted Human Mucus. PNAS. 104(5):1482-1487.

2006

• Suk, JS, J. Suh, K. Choy, S.K. Lai, and J. Hanes. 2006. Gene delivery to differentiated neurotypic cells with RGD and HIV Tat peptide functionalized nanoparticles. Biomaterials. (29):5143-5150.
• Beaucher M, E. Hersperger, A. Page-McCaw, and A. Shearn. 2006.Metastatic ability of Drosophila tumors depends on MMP activity. Dev Biol. 2006 Dec in press.
• Viswanathan K, N. Tomiya, J. Park, S. Singh, Y.C. Lee, K. Palter, and M.J. Betenbaugh. 2006. Expression of a functional Drosophila melanogaster CMP-sialic acid synthetase. Differential localization of the Drosophila and human enzymes. J Biol Chem. 281(23):15929-40.
• Tomiya N, S. Narang, J. Park, B. Abdul-Rahman, O. Choi, S. Sing, J. Hiratake, K. Sakata, M.J. Betenbaugh, K.B. Palter, and Y.C. Lee. 2006. Purification, characterization, and cloning of a Spodoptera frugiperda Sf9 beta-N-acetylhexosaminidase that hydrolyzes terminal N-acetylglucosamine on the N-glycan core. J Biol Chem. 2006 281(28):19545-60.
• Ladasky J.J., S. Boyle M. Seth. H Li, T. Pentcheva, F. Abe, S.J. Steinberg, and M. Edidin. 2006. Bap31 enhances the endoplasmic reticulum export and quality control of human class I MHC molecules. J. Immunology. 177(9):6172-6181.
• Ho YP, H.H. Chen, K.W. Leong, and T.H. Wang. 2006. Evaluating the Intracellular Stability and Unpacking of DNA Nanocomplexes by Quantum Dots-FRET. J. Control Release. 116(1):83-89.
• Suk, J.S. J. Suh, K. Choy, S.K. Lai, J. Fu, and J. Hanes. 2006. Gene Delivery to Differentiated Neurotypic Cells with RGD and HIV Tat Peptide Functionalized Polymeric Nanoparticles. Biomaterials. 27(29):5143-5150.
• Fooksman D.R., G.K. Gronvall, Q. Tang, and M. Edidin. 2006. Clustering Class I MHC Modulates Sensitivity of T Cell Recognition. J. Immunology. 176(11):6673-6680.
• Meeusen S, R. Devay, J. Block, A. Cassidy-Stone, S. Wayson, J.M. McCaffery, and J. Nunnari. 2006. Mitochondrial Inner-Membrane Fusion and Crista Maintenance Requires the Dynamin-Related GTPase Mgm1. Cell. 127(2):383-95.
• Booth, A.M., Y. Fang, J.K. Fallon, J.E.K. Hildreth, and S.J. Gould. 2006. Exosomes and HIV Gag bud from endosome-like domains of the T cell plasma membrane. J. Cell Bio. 172 (6): 923-935.
• D’Amour K.A., A.G. Bang , S. Eliazer , O.G. Kelly, A.D. Agulnick , N.G. Smart, M.A. Moorman, E. Kroon , M.K. Carpenter, and E.E. Baetge. 2006. Production of pancreatic hormone–expressing endocrine cells from human embryonic stem cells. Nature Biotechnology.e-published 19 October 2006.
• Hicks, S.W., T.A. Horn, J.M. McCaffery, D.M. Zuckerman, and C.E. Machamer. 2006. Golgin-160 Promotes Cell Surface Expression of the Beta-1 Adrenergic Receptor. Traffic. 7(12):1666-77.
• Aquillar, R.C., S.A. Longhi, J.D. Shaw, L.Y. Yeh, S. Kim, A. Schon, E. Freire, A. Hsu, W.K. McCormick, H.A. Watson, and B. Wendland. 2006. Epsin N-terminal homology domains perform an essential function regulating Cdc42 through binding Cdc42 GTPase-activating proteins.PNAS U S A. 103(11):4116-21.
• Le Bras S., and M. Van Doren. 2006. Development of the Male Germline Stem Cell Niche in Drosophila. Dev. Biol. 294(1):92-103.
• H. Takahashi, J. M. McCaffery, R. A. Irizarry, and Jef D. Boeke. 2006. Nucleocytosolic acetyl-coenzyme A synthetase required for histone acetylation and global transcription. Molecular Cell. 23(2):207-17.
• Mo, X, Y. An, C.S. Yun, and S.M. Yu. 2006. Nanoparticle-assisted visualization of binding interactions between collagen mimetic peptide and collagen fibers. Angew Chem. Int. Ed Engl. 45(14):2267-2270.
• S.M. Claypool, J. M. McCaffery, and C.M. Koehler. 2006. A Cluster of Barth Syndrome mutants results in the altered association of tafazzin with mitochondrial membranes. J. Cell Biol. 31;174(3):379-90.
• Kondo-Okamoto N, K. Ohkuni, K. Kitagawa, J.M. McCaffery, J.M Shaw, and K. Okamoto. 2006. The Novel F-Box Protein Mfb1p Regulates Mitochondrial Connectivity and Exhibits Asymmetric Localization in Yeast. Mol Biol Cell 17(9):3756-3767.
• Mo, K, M.P. Krebs, and S. M. Yu. 2006. Directed Synthesis and Assembly of Nanoparticles using Purple Membrane. Small. 2(4):526-529.
• Mathews W.R., D. Ong, A.B. Milutinovich, and M. Van Doren. 2006. Zinc transport activity of Fear of Intimacy is Essential for proper Gonad Morphogenesis and DE-Cadherin Expression. Development. 133(6):1143-1153.
• RS Devon, PC Orban, K Gerrow, MA Barbieri, C Schwab, LP Cao, JR Helm, N Bissada, R Cruz-Aguado, T-L Davidson, J Witmer, M Metzler, CK Lam, W Tetzlaf, EM Simpson, JM McCaffery, AE El-Husseini, BR Leavitt, and MR Hayden. 2006. Als2 deficient mice exhibit disturbances in endosome trafficking associated with motor behavioral abnormalities. PNAS. in press.
• J.B. Carmichael, C. Stoica, H. Parker, J.M.McCaffery, A.J. Simmonds, and T.C. Hobman. 2006.RNA Interference Effector Proteins Localize to Mobile Cytoplasmic Puncta in Schizosaccharomyces pombe. Traffic. in press.
• Quenneville, N.R., T.Y. Chao, J.M. McCaffery, and E. Conibear. 2006 Domains within the GARP subunit Vps54 confer separate functions in complex assembly and early endosome recognition. Mol Biol Cell. 17(4):1859-70.
• Okoye, M., G.L. Sexton, E. Huang, J.M. McCaffery, and P. Desai. 2006. Functional analysis of the triplex proteins (VP19C and VP23) 1 of herpes simplex virus type-1. J. Virology. 80(2):929-40.
• Sampathkumar S.G, L. Av, M.B. Jones, Z. Sun, and K.J. Yarema. 2006. Metabolic Installation of Thiols Into Sialic Acid Modulates Adhesion and Stem Cell Biology. Nature Chem. Biol. 2(3):149-152.

2005

• Brown, C.L., K.C. Maier, T. Stauber, L.M. Ginkel, L. Wordeman, I. Vernos, and T. Schroer. 2006. Kinesin-2 is a Motor for Late Endosomes and Lysosomes. Traffic. 6(12):1114-1124.
• Vong QP, K. Cao, L.Y. Li, P.A. Iglesias, and Y. Zheng. 2005. Chromosome Alignment and Segregation Regulated by Ubiquitination of Survivin. Science. 310(5753)1499-14504.
• Ingerman, E. , E.M. Perkins, M. Marino, J.M. McCaffery, J.E. Hinshaw, and J. Nunnari. 2005. Dnm1 forms spirals that are structurally tailored to fit mitochondria. J. Cell Biol. 170(7):1021-7.
• Yao Q, Chen J, Cao H, Orth JD, J.M. McCaffery, Stan RV, McNiven MA. 2005. Caveolin-1 interacts directly with dynamin-2. J Mol Biol. 348(2):491-501.
• Yoshino, A, SRG Setty, C Poynton, EL Whiteman, A Saint-Pol, CG Burd, L Johannes, EL Holzbaur, M Koval, JM McCaffery and MS Marks. 2005. tGolgin-1 (p230, golgin-245) modulates Shiga toxin transport to the Golgi and Golgi motility toward the microtubule organizing centre. J. Cell Sci., in press.
• Ahn KC, Jun AJ, Pawar P, Jadhav S, Napier S, McCarty OJ, Konstantopoulos K. 2005. Preferential binding of platelets to monocytes over neutrop. Biochem Biophys Res Commun. 2005 Apr 1;329(1):345-55.
• Mathews WR, Wang F, Eide DJ, Van Doren M. 2005 Drosophila fear of intimacy encodes a Zrt/IRT-like protein (ZIP) family zinc transporter functionally related to mammalian ZIP proteins. J Biol Chem. 2005 Jan 7;280(1):787-95. Epub 2004 Oct 27.
• Aguilar R.C., S.A. Longhi, J.D. Shaw, L.Y. Yeh, S. Kim, A. Schon, E. Freire, A. Hsu, W.K. McCormick, H. A. Watson, and B. Wendland. 2005. Epsin N-terminal Homology Domains Perform an Essential Function Regulating Cdc-42 Through Binding Cdc-42 GTP-ase-activating Proteins. PNAS. 103(11)4116-4121.
• Swaminathan J, Baxter EM, Corces VG.. 2005. The role of histone H2Av variant replacement and histone H4 acetylation in the establishment of Drosophila heterochromatin. Genes Dev. 2005 Jan 1;19(1):65-76.
• Zhang, Z,, J.M. McCaffery, R.G.S. Spencer, and C.A. Francomano. 2005. Growth and integration of neocartilage with native cartilage in vitro. Journal of Orthopaedic Research 23 (2005) 433-439.
• Esue O, Cordero M, Wirtz D, Tseng Y. 2005. The assembly of MreB, a prokaryotic homolog of actin. J Biol Chem. 2005 Jan 28;280(4):2628-35.

2004

• Patel HV, KA Vyas, X Li, R. Savtchenko, and S. Roseman. 2004. Subcellular distribution of enzyme I of the Escherichia coli phosphoenolpyruvate:glycose phosphotransferase system depends on growth conditions. Proc Natl Acad Sci U S A. 2004 Nov 22; [Epub ahead of print]
• DeFalco, T., S. Le Bras, and M. Van Doren. 2004. Abdominal-B is essential for proper sexually dimorphic development of the Drosophila gonad. Mech Dev. 2004 Nov;121(11):1323-33.
• Mathews WR, F. Wang, D.J. Eide, and M. Van Doren. 2004. Drosophila fear of intimacy encodes a ZIP family zinc transporter functionally related to mammalian ZIP proteins.. J Biol Chem. 2004 Oct 27; [Epub ahead of print]
• Fannjiang, Y.,W.C. Cheng, S.J. Lee, Bing Qi, Jonathan Pevsner, J.M. McCaffery, R.B. Hill, G. Basanez, and J.M.Hardwick. 2004. Mitochondrial fission proteins regulate programmed cell death in yeast. Genes and Development. 18(22):2785-2797.
• Yun C. Chang, M.F.Stins, J.M. McCaffery, G.F. Miller, D.R. Pare, T. Dam, M. Paul-Satyaseela, K.S. Kim, and K.J. Kwon-Chung. 2004. Cryptococcal Yeast Cells Invade the Central Nervous System via Transcellular Penetration of the Blood-Brain Barrier. Infect. Immun.72 (9) 4985-4995.
• Frederick, R.L., J.M. McCaffery , K.W. Cunningham, K. Okamoto, and J.M. Shaw. 2004. Yeast Miro GTPase, Gem1p, regulates mitochondrial morphology via a novel pathway. J. Cell Biol. 167:87-98.
• Schmidt M. 2004. Survival and cytokinesis of Saccharomyces cerevisiae in the absence of chitin. Microbiology. 2004 Oct;150(Pt 10):3253-60.
• Meeusen, S, J.M. McCaffery, and J. Nunnari. 2004. Mitochondrial Fusion Intermediates Revealed in Vitro. Science. 305:1747-1752.
• Koshiba, T, S.A. Detmer, J.T. Kaiser, H. Chen, J.M. McCaffery, and D.C. Chan. 2004. Structural Basis of Mitochondrial Tethering by Mitofusin Complexes. Science. 305:858-862.
• Zhang, Z., J. M. McCaffery, R.G. S. Spencer, and C.A. Francomano. 2004.Hyaline Cartilage Engineered by Chondrocytes in Pellet Culture: Histologic, Immunohistochemical and Ultrastructural Analysis in Comparison with Cartilage. J. Anatomy. 205:229-237.
• Capps, G.G., S. Pine M. Edidin, and M.C. Zúñiga. 2004. Short Class I Major Histocompatibility Complex Cytoplasmic Tails Differing in Charge Detect Arbiters of Lateral Diffusion in the Plasma Membrane. Biophysical Journal 86:2896-2909.
• Dawson M., E. Krauland, D. Wirtz, and J. Hanes. 2004. Transport of polymeric nanoparticle gene carriers in gastric mucus. Biotechnol Prog. 2004 May-Jun;20(3):851-7.
• Zhang X, J.C. Schwartz, X. Guo, S. Bhatia, E. Cao, M. Lorenz , M. Cammer, L. Chen, Z.Y. Zhang, M.A. Edidin, S.G. Nathenson, S.C. Almo. 2004. Structural and functional analysis of the costimulatory receptor programmed death-1. Immunity. 20(3):337-47.
• Davids, B. J., K. Mehta, L. Fesus, J. M. McCaffery, and F. D. Gillin. 2004. Dependence of Giardia lamblia growth and encystation on novel transglutaminase activity. Mol. Biochem. Parasitology. in press.
• Reinke A, S. Anderson, J.M. McCaffery, J. Yates 3rd, S. Aronova, S. Chu, S. Fairclough, C. Iverson, K.P. Wedaman, and T. Powers. 2004. TOR complex 1 (TORC1) includes a novel component, Tco89p (YPL180w), and cooperates with Ssd1p to maintain cellular integrity in S. cerevisiae. J Biol Chem. 2004 Jan 21.
• Huyer G., G.L. Longsworth, D.L. Mason, M.P. Mallampalli, J.M. McCaffery, R.L. Wright, AND S. Michaelis. 2004. A striking quality control subcompartment in Saccharomyces cerevisiae: The endoplasmic reticulum-associated compartment (ERAC). Mol Biol Cell. E-PUBLISHED Dec 10 2003.

2003

• King SJ, Brown CL, Maier KC, Quintyne NJ, Schroer TA. 2003. Analysis of the dynein-dynactin interaction in vitro and in vivo. Mol Biol Cell. 14(12):5089-97.
• Kwik J, Boyle S, Fooksman D, Margolis L, Sheetz MP, Edidin M. 2003. Membrane cholesterol, lateral mobility, and the phosphatidylinositol 4,5-bisphosphate-dependent organization of cell actin. Proc Natl Acad Sci U S A. 100(24):13964-9.
• Bettegowda C, L.H. Dang, R. Abrams, D.L. Huso, L. Dillehay, I. Cheong, N. Agrawal, S. Borzillary, J.M. McCaffery, E.L. Watson, K.S. Lin, F. Bunz, K. Baidoo, M.G. Pomper, K.W. Kinzler, B. Vogelstein, S. Zhou. 2003. Overcoming the hypoxic barrier to radiation therapy with anaerobic bacteria. PNAS (USA). 100(25):15083-15088.
• Meriin, A.B., X. Zhang, N.B. Miliaras, B. Wendland, J.M. McCaffery, Y. O. Chernoff, A.Kazantsev, and M.Y. Sherman. 2003. Aggregation of a polypeptide with expanded polyglutamine domain in yeast cells leads to defects in endocytosis. Mol. Cell. Bio..23(21):7554-7565.
• Malin E-L. Weiland, J.E. Daniel Palm, William J. Griffiths, J. M. McCaffery, and Staffan G. Svard.2003. Characterization of alpha-1 giardin: an immuno-dominant Giardia lamblia annexin with lectin activity. Int.J.Parasitology. 33(12):1341-51.
• Eckley DM, Schroer TA. 2003. Interactions between the evolutionarily conserved, actin-related protein, Arp11, actin, and Arp1. Mol Biol Cell. 2003 Jul;14(7):2645-54.
• Muller EM, Mackin NA, Erdman SE, Cunningham KW. 2003. Fig1p facilitates Ca2+ influx and cell fusion during mating of Saccharomyces cerevisiae. J Biol Chem. 2003 Oct 3;278(40):38461-9.
• Yoshino, A., B. M. Bieler, D. Harper, D.A. Cowan, S. Sutterwala, D. M. Gay, N.B. Cole, J.M. McCaffery, and M. S. Marks. 2003. A role for GRIP domain proteins in structure and function of the trans Golgi network. J.Cell Science. 116(21):1441-1454.
• Sekiya-Kawasaki, M. , A.C. Groen, M. J. T. V. Cope, M. Kaksonen, C. Zhang, K.M.. Shokat, B.Wendland, K.L. McDonald, J.M. McCaffery and D.G. Drubin. 2003. Dynamic phosphoregulation of the cortical actin cytoskeleton and endocytic machinery revealed by real-time chemical genetic analysis. J. Cell Biol. 162(5):765-72.
• DeFalco, T., G. Verney, A.B. Jenkins, J.M. McCaffery, S. Russell, and M. Van Doren. 2003. Sex-specific programmed cell death controls sexual dimorphism in the Drosophila embryonic gonad. Developmental Cell. 5(2):205-16.
•Jenkins, A.B., J.M. McCaffery, and M. Van Doren. 2003.Drosophila E-cadherin is essential for proper germ cell-soma interaction during gonad morphogenesis. Development. 30(18):4417-26.
• Sun CH, J.M. McCaffery, D.S. Reiner, F.D. Gillin. 2003. Mining the giardia lamblia genome for new cyst wall proteins. J. Biol. Chem. 278(24):21701-8.
• Van Doren M, Mathews WR, Samuels M, Moore LA, Broihier HT, Lehmann R. 2003. fear of intimacy encodes a novel transmembrane protein required for gonad morphogenesis in Drosophila. Development. 2003 Jun;130(11):2355-64.
• Sesaki H, S.M. Southard, M.P. Yaffe, R.E.Jensen. 2003. Mgm1p, a Dynamin-related GTPase, Is Essential for Fusion of the Mitochondrial Outer Membrane. Mol Biol Cell.(6):2342-56.
• Shaw, JD, H. Hama, F. Sohrabi, D.B. DeWald, and B. Wendland. 2003. PtdIns(3,5)P2 is Required for Delivery of Endocytic Cargo into the Multivesicular Body. Traffic. 4(7):479-90.
• Mythili Suntharalingam and Susan R. Wente. 2003. Peering through the Pore: Nuclear Pore Complex Structure, Assembly, and Function . Review. Developmental Cell, Vol. 4, 775&endash;789.
• Ryan, K.J., J.M. McCaffery, and S.R. Wente. 2003. The Ran GTPase cycle is required for yeast nuclear pore complex assembly. J. Cell Bio. 160(7):1041-53.
• Tang Q and Edidin M. 2003. Lowering the barriers to random walks on the cell surface. Biophys J. 2003 Jan;84(1):400-7.
• Walters, J., G.L. Sexton, J. M. McCaffery, and P. Desai. 2003. Mutation of single hydrophobic residues in the N-terminus of VP5 abolish interaction with the scaffold protein and abrogate closure of herpes simplex virus type 1 capsid shells. J. Virology 77(7):4043-59.
• Wedaman1, K.P., Aaron Reinke1, Scott Anderson, John Yates III, J. M. McCaffery, and Ted Powers. 2003. Tor Kinases Are in Distinct Membrane-associated Protein Complexes in Saccharomyces cerevisiae.. Mol. Bio. Cell. (3):1204-20.
• Handwerger KE, Murphy C, Gall JG. 2003. Steady-state dynamics of Cajal body components in the Xenopus germinal vesicle. J Cell Biol. 160(4):495-504.
• Elmendorf, H.G., S.C. Dawson, and J.M. McCaffery. 2003. The Role of the Cytoskeleton of Giardia lamblia in Motility and Attachment. Int.J.Parasitology 33(1) 3-28.
• Burdick, M.M., J.M. McCaffery, B.S. Bochner, and K. Konstantopoulos. 2003. Relative Contributions of Glycolipids, Integrins, and Other Glycoproteins in LS174T Colon Carcinoma Cell Adhesion to Endothelium Under Flow. Am. J. Phys.284(4):C977-C987.

2002

• Onyango, P., Ivana Celic, J.M. McCaffery , J. D. Boeke and A. P. Feinberg. 2002. SIRT3, a human SIR2 homologue, is an NAD-dependent deacetylaselocalized to mitochondria. PNAS. 99(21):13653-13658.
• Saiardi, A., Catherine Sciambi, J.M. McCaffery, B. Wendland, and S.H. Snyder. 2002. Inositol Pyrophosphates Regulate Endocytic Trafficking. PNAS. 99(22):14206-14211.
• Spiliotis ET, Pentcheva T, and Edidin M. 2002. Probing for membrane domains in the endoplasmic reticulum: retention and degradation of unassembled MHC class I molecules. Mol Biol Cell 13(5):1566-81.
• M. Edidin, and J.M. McCaffery, A Herd of Cats, but No Talking Dogs. Science’s STKE 2002. http://stke.sciencemag.org/cgi/content/full/OC_sigtrans;2002/125/pe15.
• Pentcheva T, Spiliotis ET, Edidin M. 2002. Cutting edge: Tapasin is retained in the endoplasmic reticulum by dynamic clustering and exclusion from endoplasmic reticulum exit sites. J Immunol 168(4):1538-41
• Frieman, M.B.., J.M. McCaffery, and B.P. Cormack. 2002. Distinct Functional Domains in the Candida glabrata Adhesin Epa1p. a B1-6 Glucan-Crosslinked Cell Wall Protein. Mol. Microbiol.46(2):479-492.
• Langford, T. Dianne, J.D. Silberman, S.G. Svard, J.M. McCaffery, M.L. Sogin, and F.D. Gillin. 2002. Identification of Rabs 1, 2 and GDI in a survey of the endomembrane system of Giardia lamblia. J. Exp. Parasitology. 101(1):13-24
• Harper CC, S. South, J.M. McCaffery, and S.J. Gould. 2002 Peroxisomal membrane protein import does not require Pex17p. J Biol Chem. 277(19):16498-16504.

2001

• Hadiya A. Watson, M. Jamie T.V. Cope, Aaron Chris Groen, David G. Drubin, Beverly Wendland. 2001. In vivo role for Actin regulating kinases in endocytosis and yeast epsin phosphorylation Mol. Biol. Cell. 12 (11) 3668-3679.
• Desai, P., G.L.Sexton, J.M. McCaffery, and S. Person. 2001. A Null Mutation in the Gene Encoding the UL37 Polypeptide of Herpes Simplex Virus Type 1 AbrogatesVirus Maturation. J. Virology Nov 2001, 75(21) p. 10259-10271.
• Roseman S. Reflections on Glycobiology. 2001. J Biol Chem. 2001 Sep 11.
• Emily R. Hildebrandt and M. Andrew Hoyt. 2001. Cell Cycle-dependent Degradation of the Saccharomyces cerevisiae Spindle Motor Cin8p Requires APCCdh1 and a Bipartite Destruction Sequence. Mol. Biol. Cell, 12(11): 3402-3416.
• Reiner, D.S., J.M. McCaffery, and F.D.Gillin. 2001. Reversible Interruption of Giardia lamblia Cyst Wall Protein Transport In a Novel Regulated Secretory Pathway. Cellular Microbiology 3(7), 459-472.
• Tang Q, Edidin M. 2001. Vesicle trafficking and cell surface membrane patchiness. Biophys J. 2001 Jul;81(1):196-203.
• Pentcheva T, Edidin M.Clustering of peptide-loaded MHC class I molecules for endoplasmic reticulum export imaged by fluorescence resonance energy transfer. J Immunol. 2001 Jun 1;166(11):6625-32.
• Spiliotis ET, Manley H, Osorio M, Zuniga C, Edidin M. 2001. Selective export of MHC class I molecules from the ER after their dissociation from TAP. Immunity. 2001 Feb;14(2):205. No abstract available.
• Domart-Coulon IJ, Elbert DC, Scully EP, Calimlim PS, and Ostrander GK. 2001. Aragonite crystallization in primary cell cultures of multicellular isolates from a hard coral, Pocillopora damicornis. Proc Natl Acad Sci U S A 2001 Oct 9;98(21):11885-90.
• Tseng, Y., E. Federov, J.M. McCaffery, A.C. Almo, and D. Wirtz. 2001. Micromechanics and Ultrastructure of Actin Filament Networks Crosslinked by Human Fascin- A Comparison with a-actinin. J. Mol. Biol. (2001) 310, 351-366.
• Wang, G., J.M. McCaffery, B. Wendland, S. Dupre, R. Haguenauer-Tsapis, and J.M. Huibregtse. 2001. The Rsp5p Ubiquitin-protein Functions at Multiple Sites In the Endocytic Pathway. Molecular and Cellular Biology. 21(10):3564-3575.
• Cerveny, K.L., J.M. McCaffery, and Robert E. Jensen. 2001. Division of mitochondria requires a novel DNM1-interacting protein, Net2p. Mol. Biol. Cell 12: 309-321.
• Aiken Hobbs, A.E., M. Srinivasan, J.M. McCaffery, and R.E. Jensen. 2001. Mmm1p, a mitochondrial outer membrane protein, is connected to mitochondrial DNA nucleoids and required for mtDNA stability. J. Cell Biol. 152: 1-11.

2000

• B. Pishvaee, Costaguta, G., B.G. Yeung, S. Ryazantsev, T. Greenert, L.E. Green, E. Eisenberg, J.M. McCaffery, and G.S. Payne. 2000. A Yeast DNA J Protein Required For Clathrin Coated Vesicle Uncoating In Vivo. Nature Cell Bio. 2: 958-963.
• Wu, M.M., J. Lopis, S. Adams, J.M. McCaffery, K. Teter, M.S. Kulomaa, T.E. Machen, H-P.H. Moore, and R.Y. Tsien. 2000. Studying Organelle Physiology Using Targeted Avidin anf Fluorescein-Biotin. Methods Enzymol. 327: 546-64
• Gerasimova TI, Byrd K, Corces VG. 2000. A chromatin insulator determines the nuclear localization of DNA. Mol Cell. 6(5):1025-35.
• Knodler, L.A., R. Noiva, K. Mehta, J.M. McCaffery, S.B. Aley, S. Svard, T.G. Nystul, D.S. Reiner, J.D.Silberman, and F.D. Gillin. 2000. Novel Protein Disulfied Isomerases from the Early-Diverging Protist, Giardia lamblia. J. Biol. Chem. 275: 28339.
• Mosdy, A.D., J.M. McCaffery, and J.M. Shaw. 2000. Dnm1p GTPase-Mediated Mitochondrial Fission Is A Multi-Step Process Requiring The Novel Untegral Membrane Component Fis1p. J. Cell Bio. 151(2): 367-379.
• Collins, C.S., J.E. Kalish, J.C. Morrell, J.M. McCaffery, and S.J. Gould. 2000. The Peroxisome Biogenesis Factors Pex4p, Pex1p, and Pex6p Act In The Terminal Steps of Peroxisomal Matrix Protein Import. Mol. Cell. Bio. 20: 7516-7526.
• Wong, E.D., J.A. Wagner, S.W. Gorsich, J.M. McCaffery, J.M. Shaw, and J. Nunnari. 2000. The Dynamin-related GTPase, Mgm1p, Is An Intermembrane Space Protein Required For Maintenance Of Fusion Competent Mitochondria. J. Cell Bio. 151(2): 341-352.
• Crooks, D., S-J. Kil, J.M. McCaffery, and C. Carlin. 2000. E3-13.7 Integral Membrane Proteins Encoded by Human Adenoviruses Alter Epidermal Growth Factor Receptor Trafficking by Interacting Directly with Receptors in Early Endosomes. Mol. Bio. Cell 11:3559-3572.
• Spiliotis ET, Osorio M, Zuniga MC, Edidin M. 2000. Selective export of MHC class I molecules from the ER after their dissociation from TAP. Immunity. 2000 Dec;13(6):841-51.
• Kenworthy, A.K., N. Petranova, and M. Edidin, 2000. High Resolution FRET Microscopy of Cholera toxin B-subunit and GPI=anchored Proteins in Cell Plasma Membranes. Mol. Biol. Cell 11(5):1645-1655.
• Schrader M, King SJ, Stroh TA, Schroer TA. 2000. Real time imaging reveals a peroxisomal reticulum in living cells. J Cell Sci. Oct;113 (Pt 20):3663-71.
• Oh, S., J.M. McCaffery, G. Laver, R. Webster, and M. Eichelberger. 2000. Dose-Dependent Changes in Influenza Virus-Infected Dendritic Cells Result in Increased Allogenic T Cell Proliferation at Low, but not High, Doses of Virus. J. of Virology. 74: 5460-5469.
• Wu, M.M., J. Lopis, S. Adams, J.M. McCaffery, M.S. Kulomaa, T.E. Machen, H-P.H. Moore, and R.Y. Tsien. 2000. Using Targeted Avidin and Membrane Permeant Fluorescein Biotin to Study Secretory Pathway Organelle pH Regulation. Chem and Biol.. 7(3):197-209.
• King S.J. and T.A. Schroer. 2000. Dynactin Increases the progressivity of the Cytoplasmic Dynein Motor. Nat. Cell Biol. 2(1):20-24.

1999

• Gheber, L.A. and M. Edidin. 2000. A Model for Membrane Patchiness: Lateral Diffusion in the Presence of Barriers and Vesicle Traffic. Biophys. J. 77(6):3163-3175.
• Kenworthy, A.K. and M. Edidin. 2000. Imaging Fluorescence Resonance Energy Transfer as Probe of Membrane Organization and Molecular Associations of GPI-anchored Proteins. Methods Mol. Bio. 116:37-49.
• Kopecky, E, and G.K. Ostrander. 1999. Isolation and Primary Culture Viable Multicellular Endothelial Isolates from Hard Corals. InVitro Cell. Deve.- Animal. 35:616-624.
• Cottingham, F.R., L. Gheber, D.L. Miller, and M.A. Hoyt. 1999. Novel Roles for Saccharomyces Cerevisiae Mitotic Spindle Motors. J. Cell Biol. 147(2):335-350.
• Wendland B. K.E. Steece, and S.D. Emr. 1999. Yeast Epsins Contain an Essential N-terminal ENTH Domain, Bind Clathrin, and are Required for Endocytosis. EMBO J. 18(16):4383-4393.
• Gheber, L., S.C. Kuo, and M.A. Hoyt. 1999. Motile Properties of the Kinesin-related Cin8p Spindle Motor Extracted From Saccharomyces Cerevisiae Cells. J. Biol. Chem. 274(14)9564-9572.
• Didier Marguet, Elias T. Spiliotis, Tsvetelina Pentcheva, Michael Lebowitz, Jonathan Schneck, and Michael Edidin.1999 Lateral Diffusion of GFP-Tagged H2Ld Molecules and of GFP-TAP1 Reports on the Assembly and Retention of These Molecules in the Endoplasmic Reticulum. Immunity, 11:231-240 (cover).
• Bleazard, W., J.M. McCaffery, E.J. King, S. Bale, A. Mozdy, Q. Tieu, J. Nunnari, and J.M. Shaw. 1999. The dynamin-related GTPase Dnm1 regulates mitochondrial fission in yeast. Nature Cell Biology 1:298-304.
• Eckley, D.M., S.R. Gill, K.A. Melkonian, J.B. Bingham, H.V. Goodson, J.E. Heuser, and T.A. Schroer. 1999. Analysis of Dynactin Subcomplexes Reveals a Novel Actin-related Protein Associated the ARP 1 Minifilament Pointed End. J. Cell Biol. 147(2):307-320.
• Quintyne, N.J., S.R. Gill,D.M. Eckley, C.L. Cregio, D.A. Compton, and T.A. Schroer. 1999. Dynactin is Required for Microtubule Anchoring at Centrosomes. J. Cell Biol. 147(2):321-334.
• Knodler, L.A., R. Noiva, K. Mehta, J.M. McCaffery, S.B. Aley, S. Svard, T.G. Nystul, D.S. Reiner, J.D.Silberman, and F.D. Gillin. 1999. Novel Protein Disulfied Isomerases from the Early-Diverging Protist, Giardia lamblia. J. Biol. Chem. 274:29805-29811.
• Fischer, T., E. Elenko, J.M. McCaffery, L. De Vries, and M.G. Farquhar. 1999. Clathrin Coated Vesicles Bearing GAIP Possess GAP Activity in vitro. PNAS. 96:6722-6727.
• Bowman, A.B., R.S. Patel-King, S.E. Benashski, J.M. McCaffery, L.S.B. Goldstein, and S.M. King. 1999. Drosophila roadblock and Chlamydomonas LC7: A conserved family of dynein-associated proteins involved in axonal transport, flagellar motility and mitosis. J. Cell Bio. 146:165-179.
• Svard, S.G., C. Rafferty, J.M. McCaffery, M.W. Smith, D.S. Reiner, and F.G. Gillin. 1999. A signal recognition particle receptor gene from the early-diverging eukaryote, Giardia lamblia. Molecular and Biochemical Parasitology 98: 253-264.
• Simon, A., A. Romert, A-L Gustafson, J.M. McCaffery and U. Eriksson. 1999. Intracellular Localization and Membrane Topology of 11-cis Retinol Dehydrogenase in the Retinal Pigment Epithelium suggest a Compartmentalized Syhthesis of 11-cis Retinaldehyde. J. Cell Science 112: 549-558.

1998

• Lin, P., H. Le-Niculescu, R. Hofmeister, J.M. McCaffery, M. Jin, H. Henneman, T. McQuistan, L. De Vries, and M.G. Farquhar. 1998. The Mammalian Calcium-Binding Protein, Nucleobindin (CALNUC), is a Golgi Resident Protein. J. Cell Biol.141: 1515-1527
• Seaman, M.N.J., J.M. McCaffery, and S.D. Emr. 1998. A Membrane Coat Complex Essential for Endosome to Golgi Retrograde Transport in Yeast. J. Cell Biol. 142:665-681
• Lopis, J., J.M. McCaffery, A. Miyawaki, M.G. Farquhar, and R.Y. Tsien. 1998. Measurement of Cytosolic, Mitochondrial, and Golgi pH in Single Living Cells with Green Fluorescent Proteins. PNAS 95: 6803-6808.
• Svard, S., Tze-Chiang Meng, M.L. Hetsko, J.M. McCaffery, and F.D. Gillin. 1998. Differentation-associated surface antigen variation in the ancient eukaryote Giardia lamblia. Molecular Microbiology 30:979-989.
• Hetsko, M.L., J.M. McCaffery, Tze-Chiang Meng, and F.D. Gillin. 1998. Giardia lamblia: Cellular and Transcriptional Changes During Excystation in vitro. J. Exp. Parasitology.88: 172-183.
• Elgersma, Y., M. Elgersma-Hooisma, T. Wenzel, J.M. McCaffery, M.G. Farquhar, and S. Subramani. 1998. A Mobile PTS2-receptor for Peroxisomal Protein Import in Pichia pastoris. J. Cell Biol. 140: 807-820.
• De Vries, L., E. Elenko, J.M. McCaffery, L. Hubler, T. McQuistan, N. Watson, and M.G. Farquhar. 1998. RGS-GAIP is Located on Clathrin-coated Vesicles. Mol. Bio. Cell. 9: 1123-1134.

1997

• Miyawaki, Atsushi, J. Llopis, H. Roger, J. Adams, J.M. McCaffery, M. Ikura, and R. Tsien. 1997. Cameleons: Fluorescent Indicators for Ca2+ based on Green Fluorescent Proteins and Calmodulin. Nature. 388:882-887.
• Turchany, J.M., J.M. McCaffery, S.B. Aley, and F.D. Gillin. 1997. Ultrastructural Effects of Lactoferrin and Lactoferricin Binding on Giardia lamblia Trophozoites. J. Eukaryotic Micro.44:68-72.

1996

• Wendland, B., J.M. McCaffery, Qin Xiao, and S.D. Emr. 1996. A Novel FACS-Based Screen for Endocytosis Mutants Identifies a Yeast Homolog of Mammalian eps15. J. Cell Biol. 135:1485-1500.
• Rowe, T., M. Aridor, J.M. McCaffery, H. Plutner, and W.E. Balch. 1996.COPII/COPI Exchange on ER-derived Vesicles is essential for Transport to the Golgi Complex. J. Cell Biol. 135:895-911.
• Reider, S.E., L.M. Banta, K. Kohrer, J.M. McCaffery, and S.D. Emr. 1996. VPS28 Encodes a 28kD Protein Required for Normal Endocytic and Biosynthetic Traffic to the Yeast Vacuole. Mol. Bio. Cell. 7:985-999.
• Gillin, F.D., D.S. Reiner and J.M. McCaffery. 1996. Cell Biology of Giardia Lamblia. Annual Review of Microbiology. 50:679-705.
• Chammas, R., J.M. McCaffery, A. Klein, Y. Ito, L. Saucan, G.E. Palade, M.G. Farquhar, and A. Varki. 1996. Uptake and Incorporation of a Fluorescein-tagged Sialic acid Donor into isolated intact rat liver Golgi. Sialyltransferase action overlaps with B-galactosyltransferase but not with sialic acid O-acetyltransferase. Mol. Bio. Cell. 7:1691-1707.

1995

• Gillin, F.D., J.M. McCaffery, D.S. Reiner, S.B. Aley, T.C. Meng, and M.L. Hetsko. 1995. Cell Biology of the Giardia Lamblia Life Cycle. Parasitology for the 21st Century: ICOPA VIII. pp117-124. Ozel and Alkan (eds).
• Denker, S., J.M. McCaffery, G.E. Palade P. Insel, and M.G. Farquhar. 1995. Distribution and in vivo localization of Heterotrimeric G Protein alpha subunits in the exocrine pancreas Golgi: Functional Implications. J. Cell Biol. 133:1027-1040.
• Acharya, U., J.M. McCaffery, R. Jacobs, and V. Malhotra. 1995. Reconstitution of vesiculated Golgi membranes (VGMs) into stacks of cisternae: Requirement of NSF in stack formation. J. Cell Biol. 129: 577-589.
• McCaffery, J.M. and M.G. Farquhar. 1995. Localization of GTPases (GTP-binding Proteins) by indirect immunofluorescence and immunoelectron microscopy. Methods in Enzymology. 257: 259-279.

1994

• McCaffery, J.M., G.M. Faubert, and F.D. Gillin. 1994. Giardia lamblia: Traffic of a trophozoite variant surface protein and a major cyst wall epitope during growth, encystation, and antigenic switching. J. Exp. Parasitology. 79:236-249.
• McCaffery, J.M. and F.D. Gillin. 1994. Giardia lamblia: Ultrastructural bases of protein transport during growth and encystation. 1994. J. Exp. Parasitology. 79:220-235.
• Wilson, B.S., C. Nuoffer, J.L. Meinkoth, J.M. McCaffery, J.R. Feramisco, W.E. Balch, and M.G. Farquhar. 1994. A Rab1 mutant affecting guanine nucleotide exchange promotes disassembly of the Golgi apparatus. J. Cell Biol. 125: 557-571.
• Pind,S., C. Nuoffer, J.M. McCaffery, H. Plutner, H.W. Davidson, M.G. Farquhar, and W.E. Balch. 1994. Rab1 and Ca2= are required for fusion of carrier vesicles mediating endoplasmic reticulum to Golgi transport. J. Cell Biol. 125: 239-252.
• Balch. W.E., J.M. McCaffery, H.Plutner, and M.G. Farquhar. 1994. Vesicular stomatitis virus glycoprotein is sorted and concentrated during export from the endoplasmic reticulum. Cell. 76: 841-852.

1993

• Reiner,D.S., M.Hetsko, S. Das, H.D. Ward, J.M. McCaffery, and F.D. Gillin. 1993. Giardia lamblia: Absence of cyst antigens and reduced secretory vesicle formation and bile salt uptake in an encystation-deficient subline. J. Exp. Parasitology. 77: 461-472.
• Hendricks, L. C., J.M. McCaffery, G. E. Palade, and M. G. Farquhar. 1993. Disruption of ER to Golgi transport leads to the accumulation of large aggregates containing b–COP in pancreatic acinar cells. Mol. Bio. Cell. 4:413-424.

1992

• Hendricks, L.C., S.L. McClanahan, J.M. McCaffery, G.E. Palade, M.G. Farquhar. 1992. Brefeldin A affects early events but does not affect late events along the exocytic pathway in pancreatic acinar cells. Proc. Natl. Acad. Sci. USA. 89: 7242-7246.
• Jacobson, B., J. E. Schnitzer, J.M. McCaffery and G. E. Palade. 1992. Isolation and partial characterization of the luminal plasmalemma of microvascular endothelium from rat lungs. Eur. J. Cell. Bio. 58:296-306. (cover)
• Hendricks L.C., S.L. McClanahan, J.M. McCaffery, G. E. Palade, and M. G. Farquhar. 1992. Golgi remnants persist and Golgi enzymes do not redistribute to the rough ER in brefeldin A treated pancreas. Eur. J. Cell. Bio. 58:202-213.
• Omary, B., L. DeGrandepre, J.M. McCaffery, and M. Kagnoff. 1992. Biochemical and morphological differentiation of the human colonic diethylasulfoxide. J. Cell. Biochem. 48(3):316-323.

1991

• Schoenbeck, S., J.M. McCaffery, L. DeGrandepre, and M. Kagnoff. 1991. Detection of individual Peyer’s patch T cells that produce interleukin-5 and interferon-y. J. Immuno. Meth. 137:47-54.
• Kagnoff, M.F. DeGrandpre, L.Y., J.M. McCaffery., Schoenbeck, S. 1991. Detection by Immunofluorescence of Lymphokine-Producing T-Cells. Immunological Research. 10:255-257.

1990

• Reiner, D., J.M. McCaffery, and F. Gillin. 1990. Sorting of cyst wall proteins to a regulated secretory pathway during differentiation of the primitive eukaryote, Giardia lamblia. Euro. J. Cell. Bio. 53:142-153.
• Gillin, F., D. Reiner, and J.M. McCaffery. 1990. Organelles of protein transport in Giardia lamblia. Parasitology Today. 7:113-116.
• Gillin, F. P. Hagblom, J. Harwood, S. Aley, D. Reiner, J.M. McCaffery, M. So., and D. Guiney. 1990. Isolation and expression of the gene for a major surface protein of Giardi lamblia. Proc. Nat. Acad. Sci. U.S.A. 87:4463-4467.

• J. Marie Hardwick. 2009. Bcl-2 Proteins Regulate Mitochondrial Dynamics, Energetics and Neuronal Activity. Mitochondrial Dynamics and Physiology. Keystone Meeting, Janet Shaw and David Chan organizers. March 22-March 27 2009, Whistler, British Columbia, Canada.
• Janet Shaw. 2009. Recruitment and Assembly of the Mitochondrial Membrane Fission Machinery. Mitochondrial Dynamics and Physiology. Keystone Meeting, Janet Shaw and David Chan organizers. March 22-March 27 2009, Whistler, British Columbia, Canada.
• Jodi Nunnari. 2009. Molecular mechanism of Mitochondrial Fusion. Mitochondrial Dynamics and Physiology. Keystone Meeting, Janet Shaw and David Chan organizers. March 22-March 27 2009, Whistler, British Columbia, Canada.
  49.. David Chan. 2009. , Mitochondrial Dynamics in Neurodegenerative Disease. Mitochondrial Dynamics and Physiology. Keystone Meeting, Janet Shaw and David Chan organizers. March 22-March 27 2009, Whistler, British Columbia, Canada.
• Claypool, C., P. Boontheung, J. M. McCaffery, J. Loo, and C. Koehler. 2008. The Barth Syndrome protein Tafazzin associates with two distinct respiratory components and shapes mitochondria. Mitochondrial Biology in Cardiovascular Health & Diseases Conference. August 2008.
• Edidin, M., and S.R. Shaikh. 2007. Lipid domains are only part of the story. Mol. Biol. Cell. December. ASCB
• Van Prooyen, N. and M. Edidin. 2007. Quality control of MHC I requires Bap31 to mediate its anterograde and retrograde traffic. Mol. Biol. Cell. December. ASCB
• Yeh, T. and T.A. Schroer. 2007. Dynactin integrity and Arp1 stability depend upon Arp1 binding protein, Arp11. Mol. Biol. Cell. December. ASCB
  44.Cheong, F., K. Maier, A. Sarkeshik, J.R. Yates, and T. Schroer. 2007. Dynactin phosphorylation: multiple targets and potential regulatiory mechanisms. Mol. Biol. Cell. December. ASCB
• Maldonado-Baez, L., E.M. Perkins, and B.R. Wendland. 2007. Adapter-endocytic scaffold interaction regulates the spatiotemporal dynamics of endocytosis. Mol. Biol. Cell. December. ASCB
• McCormick, W.K., and B.R. Wendland. 2007. Finding an in vivo role for the candidate adapter protein Ent4p in Saccharomyces cerevisiae. Mol. Biol. Cell. December. ASCB
• Pierce, B. and B.R. Wendland. 2007. Characterizing the conformations of the yeast endocytic scaffold protein Pan1. Mol. Biol. Cell. December. ASCB
• Gostic, W.J., S. Johnson, and B.Wendland. 2007. A novel endocytosis assay for yeast using pH-sensitive fluorescent proteins. Mol. Biol. Cell. December. ASCB
• S. Hoppins, Jennifer Horner, J. M. McCaffery, and J. Nunnari. 2007. Coordination of Mitochondrial Outer and Inner Membrane Fusion. FASEB Summer Research Conferences. Assembly of the Mitochondrial Respiratory Chain. Tucson, Arizona.
• B. Wendland, J. M. McCaffery. 2005. Biophysical Studies of the Yeast Endocytic Scaffold Pan1 to Characterize Phosphorylation-regulated Conformations. Mol. Bio. Cell. 1937a.
• E. Ingerman, E. M. Perkins, M. Marino, J. A. Mears, J. M. McCaffery, and J. Nunnari. 2005. Dnm1, the Mitochondrial Division Dynamin, Forms Spirals that are Structurally Tailored to Fit Mitochondria. Mol. Bio. Cell. 586a.
• Zhang, Z; J.M. McCaffery; Spencer, RGS; and Francomano, CA. 2003. The Integration of Engineered Caritlge with Native Caritlge in an in vitro Model. 50th Orthopaedic Research Society Annual Meeting. March, 2004.
• K.J. Ryan, J.M.McCaffery, and S.R. Wente. 2003. A function for the Ran GTPase cycle in nuclear pore complex assembly. Gordon Conference. June 2003.
  34.H. G. Elmendorf, R. Khoury, R. E. Bouttenot, B. Booth, H. V. Goodson, and J.M. McCaffery. 2002. The Role of the Cytoskeleton in Attachment and Motility of the Protozoan Parasite Giardia lamblia. Mol. Biol. Cell 2644a.
• S. W. Hicks, R. S. Maag, J.M. McCaffery, and C. E. Machamer. 2002. Golgin-160 is Required for Golgi Structure and Function. Mol. Biol. Cell 2365a.
• Molecular characterization and Cellular Localization of a New Cyst Wall Protein in Giardia lamblia. Reiner, D.S., J.M. McCaffery, and F.D. Gillin. Woods Hole Symposium, September, 2002.
• Chin-Hung Sun1, David S. Reiner1, J. Michael McCaffery, and Frances D. Gillin. 2002. Mining the Giardia lamblia Genome Project for new cyst wall proteins. Woods Hole Symposium on Infectious Diseases. August, 2002.
• Adolfo Saiardi, Catherine Sciambi, J. Michael McCaffery, Beverly Wendland, and Solomon H. Snyder. 2002. Inositol Pyrophosphates/Inositol Lipids – Complementary role in controlling Endocytic Trafficking? Society for Neuroscience. 2002.
• Aiken-Hobbs, A.E., M. Srinivasan, J.M. McCaffery, and R.E. Jensen. 2001. Mmm1p, a Mitochondrial Outer Membrane Protein, is Connected to Mitochondrial DNA nucleoids and Required for mtDNA stability. Mol. Biol. Cell. 2106a.
• Cerveny, K.L., J.M. McCaffery, and R.E. Jensen. 2001. Net2p Interacts with Dnm1p to Mediate Mitochondrial Division. Mol. Biol. Cell. 2103a.
• Aiken, A.E., J.M. McCaffery, and R.E. Jensen. 2000. Mmm1p Plays a Role In Mitochondrial Shape and mtDNA Stability. Yeast Genetics and Molecular Biology 2000. No. 039.
• Wang, G, J.M. McCaffery, B.W. Wendland, R. Haguenauer-Tsapis, and J. Huibregtse. 2000. The Rsp5p Ubiquitin-protein Ligase Functions at Multiple Sites In the Endocytic Pathway. Yeast Genetics and Molecular Biology 2000. No. 165.
  25.Wong E.D., Jennifer A. Wagner, Steven W. Gorsich, J. Michael McCaffery, Janet M. Shaw, Jodi Nunnari. .2000. The dynamin-related GTPase, Mgm1p, is an intermembrane space protein required for maintenance of fusion competent mitochondria. Mol. Biol. Cell 1147a.
• Shaw, J.M., A.D Mozdy, and J.M. McCaffery. 2000. Dnm1p-Mediated Mitochondrial Fission in Yeast is a Multi-Step Process Requiring the Novel Integral Membrane Component, Fis1p. Mol. Biol. Cell 11a.
• Llopis, J., M.M. Wu, S. Adams, J.M. McCaffery, T.E. Machen, H.-P.H. Moore and R.Y. Tsien. 2000. Organelle pH studies using targeted avidin and fluorescein-biotin, and green fluorescent proteins. J. Physiology 527P pp 14S.
• Shaw, J.M., W. Bleazard, J.M. McCaffery, E.J. King, S. Bale, A. Mozdy, Q. Tieu, J. Nunnari. 1999. The Dynamin-related GTPase, Dnm1p, Regulates Mitochondrial Fission in Yeast. Mol. Biol. Cell. 315a.
• Yao, Q., J.D. Orth, H. Cao, J.M. McCaffery, R-V. Stan, and M.A. McNiven. 1999. Direct Physical Interactions Between Caveolin and Dynamin. Mol. Biol, Cell. 314a.
• Kuehn, D.L., G.L. Nijbroek, R. Wright, J.M. McCaffery, and S. Michaelis. 1999. The ER-Associated Body (ERAB), A Novel Membrane Structure in Yeast Induced by Mutant Forms of Ste6p. Mol. Biol, Cell. 213a.
• Fisher, T., E. Elenko, J.M. McCaffery, L. DeVries, and M.G. Farquhar. 1998. Clathrin-Coated Vesicles Bearing GAIP Possess Gap Activity In Vitro. Mol. Biol. Cell. 347a.
• Le-Niculescu, H., P. Lin, M. Jin, H. Hennemann, D. Heinegard, T. McQuistan, J.M. McCaffery, N. Watson, L. De Vries, and M.G. Farquhar. 1997. Characterization of a Golgi-Associated EF-Hand/Calcium Binding Protein That Interacts with Heterotrimeric Gai Protein Subunits. Mol. Bio. Cell. 338a.
• De Vries, L.,, E. Elenko, J. M. McCaffery, L. Hubler, T. McQuistan, N. Watson, and M.G. Farquhar. 1997. GAIP, A GAP for Gai3, is Located on Clathrin-Coated Vesicles (CCVS). Mol. Bio. Cell.143a.
• Svard, S.G., Tze-Chiang Meng, M.L.Hetsko, J.M. McCaffery, and F.D. Gillin. 1997. Differentiation-Driven Antigenic Variation of Giardia lamblia. Woods Hole Symposium on Infectious Diseases. August, 1997.
  15.Gillin, F.D., D. Reiner, and J.M. McCaffery. 1997. Regulated Secretory Vesicles in Giardia lamblia, a Primitive Parasite. Brazilian Society of Protozologists. November, 1997.
• Gillin, F.D., D.S. Reiner, M.L. Hetsko, S. Das, H.D. Ward, G.M. Faubert, T.C. Meng, J.M. McCaffery, S.B. Aley, X. Que. 1996. Regulation og Giardia lamblia Encystation and Excystation. in New Dimensions in Parasitology: Keynote Papers from the VIII InternationalCongress of Parasitology. Acta Parasitologica Turcica 1996:Sup. 1.
• Simon, A., J.M. Berrez, A.L. Gustafson, J.M. McCaffery, and U. Eriksson. 1996. Cloning and Characterization of Two Membrane Proteins Participating in Retinoid Transport and Metabolism in the Eye. Mol. Biol. Cell. 7:595a.
  12.Hanlon,D., J.M.McCaffery, M.G. Farquhar, L.S.B.Goldstein. 1996.Characterization of KIFC2, A Neuronal Specific Kinesin Superfamily Member in Mouse. Mol. Biol. Cell. 7:407a.
• McCaffery, J.M., D.S. Reiner, M.L. Hetsko, and F.D. Gillin. 1996. Gardia lamblia: Constitutive and Regulated Secretory Pathways of Protein Transport are Blocked in the Presence of the Reducing Agent Dithiothreitol (DTT). Mol. Biol. Cell. 7:153a.
• Reiner D., J.M. McCaffery, M. Hetsko, and F.D. Gillin. 1996. Localization and lack of Metabolism of Ceramide During Growth and Encystation of Giardia lamblia. Am. Society of Tropical Medicine and Hygiene. December, ’96.
• Wendland, B., Xiao, Q., J.M. McCaffery, and Emr, S.D. 1996. Endocytosis in Yeast: Isolation of Endocytic Mutants Utilizing Lypophilic Dye FM-140. Gordon Conference on Molecular Cell Biology. June, ’96.
• Mosely, M., N. Watson, J.M. McCaffery, C. Buckmaster, J. R. Ferramisco, and M.G. Farquhar. 1995. Inhibition of VSV-G Protein Transport from ER to Golgi by Heterotrimeric Gai3 Protein. Mol. Biol. Cell. 290a.
• McCaffery, J.M., T.C. Meng, and F.D. Gillin. 1995. Giardia Lamblia : Diminution of a Variant Surface Protein (TSA 417) During Excystation, Associated with Antigenic Switching and Possible Immune Evasion. Mol. Biol. Cell 107a.
• Chammas, R., J.M. McCaffery, A. Klein, M.G. Farquhar, and A. Varki. 1995. Topology of O-acetylation of sialic acids in rat liver hepatocytes. Xlll Annual Symposium on Glycoconjugates. August ’95.
• Denker, S., J.M. McCaffery, P. Insel, and M.G. Farquhar. 1994. Distribution of heterotrimeric G Protein alpha subunits in the rat pancreas. Mol. Biol. Cell. 443a.
• McCaffery, J.M. and F.D. Gillin. 1994. Giardia lamblia: Implications of a highly developed endomembrane system present during growth, encystation, and excystation. Mol. Biol. Cell. 374a.
• Hendricks, L. C., J.M. McCaffery, G. E. Palade, and M. G. Farquhar. 1992. Dissociated b–COP accumulates in large aggregates in BFA or N2 treated pancreatic exocrine cells(PEC). Mol. Biol. Cell. 221a.
• Hendricks, L. C., J.M. McCaffery, G. E. Palade, and M. G. Farquhar. 1992. b-COP accumulates in large aggregates when protein transport is blocked by BFA or N2 -treatment of pancreatic exocrine cells. American Society of Biochemistry and Molecular Biology Fall Symposium.
• Horvat, R., D. Predescu, J.M. McCaffery and G.E. Palade. 1992. Immunolocalization of throbomodulin on the vascular endothelium. FASEB.

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