Bruker AutoFlex III Maldi-Tof/ToF


The Bruker AutoFlex is a MALDI-TOF mass spectrometer used for qualitative analysis of high mass “delicate” bio-molecules that cannot be analyzed by other means. It is equipped with a 355nm pulsed UV laser and can operate in the linear, reflectron or ToF/ToF modes of operation, studying both positive and negative ion species. This makes it an extremely flexible analytical tool.

A range of different target plates are available for this instrument, including standard 384 spot MTP plates, pre-spotted anchor chip plates and NALDI plates (for matrixless analysis of very small molecules). An adapter is also available to accomodate target plates designed for the Applied Biosystems Voyager DE-STR located at the Johns Hopkins Medical School Mass Spectrometry Facility, allowing existing users of that instrument to utilze the Autoflex without having to purchase a seperate target plate. Sample target plates suitable for the AutoFlex can be obtained from the Chemistry Department stockroom.

A guide to Maldi matrix selection and sample preparation for this instrument can be found hereHowever, in general, you need to mix and deposit your sample on the target plate in a 1:10 sample:matrix ratio. Typical matrices used are a-cyano-4-hydroxycinnamic acid and sinapinnic acid. A quick method of MALDI sample preparation is to prepare a solution mixture containing 1uM (1pmol/uL) of sample and 10uM (10pmol/uL) of matrix. 0.5uL of the mixture is deposited on the target and allowed to dry. Several repeat depositions can yield improved spectra. Allowable sample concentrations can range from 0.1uM to 50uM, with matrix concentration scaled accordingly.

This instrument is located in Room B06, Remsen Hall and is operated on a “self-service” basis following training by the Facility Manager.

Download a sample identification grid corresponding to the standard 384 spot MTP target plates.

This instrument was purchased in part with funding provided by the NSF under grant number CHE-0840463

Please note that this instrument is currently unavailable for use.