{"id":7,"date":"2013-09-10T12:21:41","date_gmt":"2013-09-10T12:21:41","guid":{"rendered":"https:\/\/sites.krieger.jhu.edu\/template-research\/?page_id=7"},"modified":"2025-10-27T10:49:53","modified_gmt":"2025-10-27T14:49:53","slug":"publications","status":"publish","type":"page","link":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"

Full publication list is available at Google scholar<\/a><\/p>\n

Selected publications<\/strong><\/h3>\n

PKAD-R: Curated, Redesigned and Expanded Database of Experimental pKa Values in Proteins<\/a>, AY Chen, SK Panday, K Ri, E Alexov, BR Brooks, A Damjanovic, Journal of Computational Biophysics and Chemistry, 24 (9), 1189-1203, 2025<\/p>\n

Ion channel selectivity through ion-modulated changes of selectivity filter pK<\/i>a<\/sub> values,<\/a>\u00a0 AY Chen, BR Brooks, A Damjanovic, Proceedings of the National Academy of Sciences, <\/em>120 (26) e2220343120, 2023<\/p>\n

Protein pK<\/i>a<\/sub>\u00a0Prediction by Tree-Based Machine Learning<\/a>\u00a0AY Chen, J Lee, A Damjanovic, BR Brooks
\nJournal of Chemical Theory and Computation<\/em>, 18 (4), 2673-2686, 2022<\/p>\n

Determinants of conductance of a bacterial voltage-gated sodium channel<\/a>\u00a0 AY Chen, BR Brooks, A Damjanovic, Biophysical Journal<\/em> 120 (15), 3050-3069<\/p>\n

Reservoir pH replica exchange<\/a>\u00a0 A Damjanovic, BT Miller, A Okur, BR Brooks
\nThe Journal of Chemical Physics<\/em> 149 (7), 072321, 2018<\/p>\n

Constant pH molecular dynamics in explicit solvent with enveloping distribution sampling and Hamiltonian exchange<\/a>, J Lee, BT Miller, A Damjanovic, BR Brooks
\nJournal of chemical theory and computation<\/em> 10 (7), 2738-2750 (2014)<\/p>\n","protected":false},"excerpt":{"rendered":"

Full publication list is available at Google scholar Selected publications PKAD-R: Curated, Redesigned and Expanded Database of Experimental pKa Values in Proteins, AY Chen, SK Panday, K Ri, E Alexov, BR Brooks, A Damjanovic, Journal of Computational Biophysics and Chemistry, 24 (9), 1189-1203, 2025 Ion channel selectivity through ion-modulated changes of selectivity filter pKa values,\u00a0 […]<\/p>\n","protected":false},"author":40,"featured_media":0,"parent":0,"menu_order":2,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-7","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/wp-json\/wp\/v2\/pages\/7","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/wp-json\/wp\/v2\/users\/40"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/wp-json\/wp\/v2\/comments?post=7"}],"version-history":[{"count":5,"href":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/wp-json\/wp\/v2\/pages\/7\/revisions"}],"predecessor-version":[{"id":418,"href":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/wp-json\/wp\/v2\/pages\/7\/revisions\/418"}],"wp:attachment":[{"href":"https:\/\/sites.krieger.jhu.edu\/damjanovic-lab\/wp-json\/wp\/v2\/media?parent=7"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}