Publications

  1. Dana, H., Mohar, B., Sun, Y., Narayan, S., Gordus, A., Hasseman, JP., Tsegaye, G., Holt, GT., Hu, A., Walpita, D., Patel, R., Macklin, JJ., Bargmann, CI., Ahrens, MB., Schreiter, ER., Jayaraman, V., Looger, LL., Svoboda, K., Kim, DS. (2016) Sensitive red protein calcium indicators for imaging neural activity. eLife. e12727. PubMed.

 

  1. Larsch, J., Flavell, SW., Liu, Q., Gordus, A., Albrecht, DR., Bargmann, CI. (2015) A circuit for gradient climbing in C. elegans chemotaxis. Cell Reports. 12(11):1748-60.PubMed.

 

  1. Gordus, A., Pokala, N., Levy, S., Flavell, SW., Bargmann, CI. (2015) Feedback from network states generates variability in a probabilistic olfactory circuit. Cell. 161(2), 215-27. PubMed.

Preview: Kristan, W. (2015) Pinning Down Randomness. Cell. 161(2), 189-90. PubMed.

Research Highlight: Carr, F. (2015) Unpredictable Turns in the Worm. Nat. Rev. Neuro.16. PubMed.

 

  1. Pokala, N., Liu, Q., Gordus, A., Bargmann, CI. (2014) Inducible and titratable silencing of Caenorhabditis elegans neurons in vivo with histamine-gated chloride channels. Proc. Natl. Acad. Sci. USA., 111(7), 2770-5. PubMed.

 

  1. Akerboom, J., Carreras Calderón, N., Tian, L., Wabnig, S., Prigge, M., Tolö, J., Gordus, A., Orger, M.B., Severi, K.E., Macklin, J.J., Patel, R., Pulver, S.R., Wardill, T.J., Fischer, E., Schüler, C., Chen, T.W., Sarkisyan, K.S., Marvin, J.S., Bargmann, C.I., Kim, D.S., Kügler, S., Lagnado, L., Hegemann, P., Gottschalk, A., Schreiter, E.R., Looger, L.L. (2013) Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics. Front. Mol. Neurosci. , 6(2), 1-29. PubMed.

 

  1. Koytiger, G., Kaushansky, A., Gordus, A., Rush, J., Sorger, P.K., Macbeath, G. (2013) Phosphotyrosine Signaling Proteins that Drive Oncogenesis Tend to be Highly Interconnected. Mol. Cell. Proteomics., 12(5), 1204-13. PubMed.

 

  1. Marvin, J.S., Borghuis, B.G., Tian, L., Cichon, J., Harnett, M.T., Akerboom, J., Gordus, A., Renninger, S.L., Chen, T.W., Bargmann, C.I., Orger, M.B., Schreiter, E.R., Demb, J.B., Gan, W.B., Hires, S.A., Looger, L.L. (2013) An optimized fluorescent probe for visualizing glutamate neurotransmission. Nat. Methods., 10(2), 162-70. PubMed.

 

  1. Akerboom, J., Chen, T.W., Wardill, T.J., Tian, L., Marvin, J.S., Mutlu, S., Calderón, N.C., Esposti, F., Borghuis, B.G., Sun, X.R., Gordus, A., Orger, M.B., Portugues, R., Engert, F., Macklin, J.J., Filosa, A., Aggarwal, A., Kerr, R.A., Takagi, R., Kracun, S., Shigetomi, E., Khakh, B.S., Baier, H., Lagnado, L., Wang, S.S., Bargmann, C.I., Kimmel, B.E., Jayaraman, V., Svoboda, K., Kim, D.S., Schreiter, E.R., Looger, L.L. (2012) Optimization of a GCaMP calcium indicator for neural activity imaging. J. Neurosci., 32(40), 13819-40. PubMed.

 

  1. Mehlitz, A., Banhart, S., Mäurer, A.P., Kaushansky, A., Gordus, A., Zielecki, J., Macbeath, G., Meyer, T.F. (2010) Tarp regulates early Chlamydia-induced host cell survival through interactions with the human adaptor protein SHC1. J. Cell. Biol., 190(1), 143-57. PubMed.

 

  1. Kaushansky, A., Allen, J.E., Gordus, A., Stiffler, M., Karp, E.S., Chang, B.H., MacBeath, G. (2010) Quantifying protein-protein interactions in high throughput using protein domain microarrays. Nature Protocols, 5(4), 773-790. PubMed.

 

  1. Gordus, A.*, Krall, J.A.*, Beyer, E.*, Kaushansky, A., Wolf-Yadlin, A., Sevecka, M., Chang, B., MacBeath, G. (2008) Linear combinations of docking affinities explain quantitative differences in RTK signaling. Mol. Syst. Biol., 5(235), 1-10. PubMed.

 

  1. Kaushansky, A., Gordus, A., Budnik, B.A., Lane, W.S., Rush, J., and MacBeath, G. (2008) System-Wide Investigation of ErbB4 Reveals that it is Substantially More Selective than the Other ErbB Receptors. Chem. Biol.,15(8), 808-817. PubMed.

 

  1. Kaushansky, A., Gordus, A., Chang, B., Rush J., MacBeath, G. (2008) A Quantitative Study of the Recruitment Potential of all Intracellular Tyrosine Residues on EGFR, FGFR1 and IGF1R. Mol. BioSys., 4, 1-10. PubMed.

 

  1. Gordus, A., MacBeath, G. (2006) Circumventing the Problems Caused by Protein Diversity in Microarrays: Implications for Protein Interaction Networks. JACS, 128(42), 13668-13669. PubMed.

Research Highlights: Rusk, N. (2006) Overcoming protein diversity on arrays. Nat. Meth. 3, 966. PubMed.

 

  1. Jones, R.B.*, Gordus, A. *, Krall, J.A., MacBeath, G. (2006) A Quantitative Protein Interaction Network for the ErbB Receptors Using Protein Microarrays. Nature, 439, 168-174. PubMed.

 

  1. Bokinsky, G., Rueda, D., Misra, V.K., Rhodes, M.M., Gordus, A., Babcock, H.P., Walter, N.G., Zhuang, X. (2003) Single-Molecule Transition-State Analysis of RNA Folding. PNAS, 100(16), 9302-9307. PubMed.

 

* – Joint First Authors.